Available Software¶
We offer variety of third-party applications and community codes that are installed on the high-performance systems.
The information on this page may not reflect all software available on HPC systems.
See how to request software here..
If you have questions about software that is currently available, please contact the HPC Help Desk.
Alphabetical List of Software¶
- adios2
- amber
- ansys
- autodock-vina
- bcl2fastq
- bdftopcf
- beast2
- blast
- boost
- bowtie
- bowtie2
- bwa
- c-blosc
- cellranger
- cmake
- cmg
- comsol
- cp2k
- cuda
- cufflinks
- ddt
- eigen
- exabayes
- exonerate
- fastqc
- fastx-toolkit
- fftw
- font-util
- fontconfig
- fontsproto
- gatk
- gaussian
- gaussview
- gcc
- git
- gnuparallel
- gnuplot
- gperf
- gromacs
- gsl
- hdf5
- hisat2
- hmmer
- hwloc
- hybpiper
- hypre
- intel
- jdk
- jellyfish
- kokkos
- lammps
- libbeagle
- libcerf
- libfontenc
- libgd
- libgtextutils
- libidn2
- libuuid
- libxfont
- libxpm
- libzmq
- lz4
- mathematica
- matlab
- mesa
- metis
- mkfontdir
- mkfontscale
- mothur
- mpich
- mrbayes
- mumps
- muscle
- mvapich2
- namd
- netcdf-c
- netcdf-cxx
- netcdf-fortran
- nwchem
- octave
- openbabel
- openfoam
- openmpi
- orca
- parallel
- parallel-netcdf
- paraview
- parmetis
- pcre2
- perl
- petsc
- pgi
- python
- qiime2
- quantum-espresso
- r
- raxml
- revbayes
- samtools
- scotch
- snappy
- soapdenovo-trans
- soapdenovo2
- spaceranger
- spades
- star
- stringtie
- suite-sparse
- superlu-dist
- swig
- tau
- trinity
- util-macros
- valgrind
- vmd
- vsearch
- xproto
- xtrans