| Documentation | Available Software

Alphabetical List of Software

a5_pipeline
abyss
agalma
amber
amos
ansys
ant
arpack
atlas
autodock
autodock_vina
autogrid
bazel
bbcp
beagle_lib
beast
beast2
bedtools
bio-align-gen
bio-align-rna
bio-assembly-gen
bio-assembly-trans
bio-gpu
bio-misc
bio-phylo
bio-pipeline
bio-recomb-eval
bio-seq-compare
bioperl
blast
blast+
blat
boost
bowtie
bowtie2
bwa
bzip2
caffe
canu
cap3
cd-hit
clhep
clonalframe
clonalorigin
cmake
cmg
cp2k
cpmd
cuda
cufflinks
curl
ddt
dendropy
dmtcp
easybuild
eigen
espresso
exabayes
expat
fasttree
fastx_toolkit
fftw
freeglut
gamess
garli
gate
gateway-usage-reporting
gatk
gaussian
gaussview
gcc
geant4
git
globus
gnuparallel
gnuplot
gromacs
gsl
gx-map
hdf5
hisat2
hmmer
hpx
hwloc
hypre
idba
ima2p
imagemagick
impi
intel
java
jdk
jellyfish
lammps
lapack
last
libgtextutils
lmdb
lsuhpctools
lucy
mafft
magma
mathematica
matlab
mauve
mcnpx
mercurial
metis
migrate
mira
mothur
mpich
mrbayes
mummer
mummer4
mumps
muscle
mvapich2
namd
ncbiblast
netcdf
netcdf_c++
netcdf_fortran
novoplasty
nwchem
oases
octave
openbabel
openfoam
openmpi
orthofinder
pacman
parallel_netcdf
paraview
parmetis
paup
pcre
perl
petsc
pgi
phylobayes_mpi
pigz
poretools
portland
prottest
python
qiime
qiime2
quantumespresso
quorum
r
racon
raxml
ray
remora
repet
rnnotator
root
ruby
rum
samtools
scalapack
siesta
sina
soapdenovo
soapdenovo2
soapdenovotrans
soapdenovo_trans
spades
sparsehash
sprng
sspace
stacks
stampy
stringtie
structure
subversion
swift
szip
tapir
tau
tginfo
tgusage
tophat
totalview
transabyss
trinity
t_coffee
uberftp
unicore
upc
valgrind
vcftools
velvet
visit
vmatch
vmd
vtune
wannier90
wien2k
wq
xdinfo
xdresourceid
xdusage
xsede
xz
zlib

The information in this database may not reflect all software available on HPC systems. If you do not see an application that you wish to use, or if you have questions about software that is currently available, please contact the HPC Help Desk.

Software Listing by Type

a5_pipeline
abyss
agalma
amber
amos
ansys
autodock
autodock_vina
autogrid
bazel
bbcp
beagle_lib
beast
beast2
bedtools
bioperl
blast
blast+
blat
boost
bowtie
bowtie2
bwa
bzip2
caffe
canu
cap3
cd-hit
clhep
clonalframe
clonalorigin
cmake
cmg
cuda
cufflinks
curl
ddt
dendropy
dmtcp
eigen
espresso
exabayes
expat
fasttree
fastx_toolkit
fftw
freeglut
garli
gatk
gaussian
gaussview
gcc
geant4
git
gnuparallel
gnuplot
gromacs
gsl
hdf5
hisat2
hmmer
hpx
hwloc
hypre
idba
ima2p
imagemagick
impi
intel
java
jdk
jellyfish
lammps
lapack
last
libgtextutils
lmdb
lucy
mafft
mathematica
matlab
mauve
mercurial
metis
mira
mothur
mpich
mrbayes
mummer
mummer4
mumps
muscle
mvapich2
namd
netcdf
netcdf_c++
netcdf_fortran
novoplasty
nwchem
oases
octave
openbabel
openfoam
openmpi
orthofinder
parallel_netcdf
paraview
parmetis
paup
pcre
perl
petsc
pgi
phylobayes_mpi
pigz
poretools
prottest
python
qiime
qiime2
quantumespresso
quorum
r
racon
raxml
ray
remora
repet
rnnotator
root
ruby
rum
samtools
scalapack
siesta
sina
soapdenovo
soapdenovo2
soapdenovotrans
soapdenovo_trans
spades
sparsehash
sprng
sspace
stacks
stampy
stringtie
structure
subversion
swift
szip
tau
tophat
totalview
transabyss
trinity
t_coffee
valgrind
vcftools
velvet
visit
vmatch
vmd
vtune
wannier90
wq
xz
zlib

admin

easybuild
gcc
intel
pgi

application

beast
openfoam
wien2k

application/bioinformatics

bedtools
bio-align-gen
bio-align-rna
bio-assembly-gen
bio-assembly-trans
bio-gpu
bio-misc
bio-phylo
bio-pipeline
bio-recomb-eval
bio-seq-compare
dendropy
tapir
vcftools

application/biology

autodock
autodock_vina
exabayes
migrate
mrbayes
ncbiblast

application/cfd

ansys

application/chemistry

cpmd
espresso
gamess
gaussian
gaussview
nwchem

application/debugging

ddt
totalview
valgrind

application/impi

cp2k
wannier90

application/math

mathematica
matlab
octave

application/md

amber
gromacs
lammps
namd

application/others

cmg

application/physics

clhep
gate
geant4
mcnpx
root

application/profiling

tau

application/tools

bbcp
cmake
gnuparallel
pigz
remora
swift
wq

application/version control

subversion

application/visualization

gnuplot
paraview
visit

library

atlas

library/io

hdf5
netcdf
parallel_netcdf

library/math

arpack
boost
fftw
gsl
hypre
lapack
magma
metis
parmetis
petsc
scalapack
sprng

library/mpi

mpich
mvapich2
openmpi

lsuhpctools

lsuhpctools

programming/compiler

gcc
impi
intel
jdk
portland
upc

programming/languages

perl
python
r
ruby

version control tool

git

xsede

ant
gateway-usage-reporting
globus
gx-map
java
pacman
perl
tginfo
tgusage
uberftp
unicore
xdinfo
xdresourceid
xdusage
xsede

Software Listing by Cluster

Supermike2

a5_pipeline
abyss
agalma
amber
amos
ansys
arpack
atlas
autodock
autodock_vina
autogrid
bbcp
beagle_lib
beast
beast2
bedtools
bio-align-gen
bio-align-rna
bio-assembly-gen
bio-assembly-trans
bio-gpu
bio-misc
bio-phylo
bio-pipeline
bio-recomb-eval
bio-seq-compare
blast
blast+
boost
bowtie
bowtie2
bzip2
cap3
cd-hit
clhep
clonalframe
clonalorigin
cmake
cmg
cp2k
cpmd
cuda
cufflinks
curl
ddt
dendropy
dmtcp
eigen
espresso
exabayes
expat
fasttree
fastx_toolkit
fftw
freeglut
gamess
gate
gatk
gaussian
gaussview
gcc
geant4
git
gnuparallel
gnuplot
gromacs
gsl
hdf5
hisat2
hmmer
hwloc
hypre
idba
imagemagick
impi
intel
jdk
jellyfish
lammps
lapack
last
libgtextutils
lmdb
lsuhpctools
lucy
mafft
magma
mathematica
matlab
mauve
mcnpx
metis
migrate
mira
mothur
mpich
mrbayes
mummer
mummer4
muscle
mvapich2
namd
ncbiblast
netcdf
netcdf_c++
netcdf_fortran
nwchem
oases
octave
openfoam
openmpi
orthofinder
parallel_netcdf
paraview
parmetis
pcre
perl
petsc
pgi
phylobayes_mpi
pigz
portland
prottest
python
qiime2
quantumespresso
quorum
r
raxml
remora
repet
root
ruby
rum
samtools
scalapack
sina
soapdenovo2
soapdenovotrans
sparsehash
sprng
sspace
stringtie
subversion
swift
szip
tapir
tau
tophat
totalview
transabyss
trinity
t_coffee
upc
valgrind
vcftools
velvet
visit
vmatch
wannier90
wien2k
wq
xz
zlib

High Performance Computing

Louisiana State University

Alphabetical List of Software

Software Listing by Type

Software Listing by Cluster