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Alphabetical List of Software

a5_pipeline
abyss
aflowpi
agalma
amber
amos
ansys
ant
arpack
atlas
autodock
autodock_vina
autogrid
bazel
bbcp
beagle_lib
beast
beast2
bedtools
bio-align-gen
bio-align-rna
bio-assembly-gen
bio-assembly-trans
bio-gpu
bio-misc
bio-phylo
bio-pipeline
bio-recomb-eval
bio-seq-compare
bioperl
blast
blast+
blat
boost
bowtie
bowtie2
bwa
bzip2
caffe
canu
cap3
cd-hit
clhep
clonalframe
clonalorigin
cmake
cmg
comsol
cp2k
cpmd
cuda
cufflinks
curl
ddt
dendropy
dmtcp
easybuild
eigen
espresso
exabayes
expat
fasttree
fastx_toolkit
fftw
freeglut
gamess
garli
gate
gateway-usage-reporting
gatk
gaussian
gaussview
gcc
geant4
git
globus
gnuparallel
gnuplot
gromacs
gsl
gx-map
hdf5
hisat2
hmmer
hpx
hwloc
hypre
idba
ima2p
imagemagick
impi
intel
java
jdk
jellyfish
lammps
lapack
last
libgtextutils
lmdb
lsuhpctools
lucy
mafft
magma
mathematica
matlab
mauve
mcnpx
mercurial
metis
migrate
mira
mothur
mpich
mrbayes
mummer
mummer4
mumps
muscle
mvapich2
namd
ncbiblast
netcdf
netcdf_c++
netcdf_fortran
novoplasty
nwchem
oases
octave
openbabel
openfoam
openmpi
orthofinder
pacman
parallel_netcdf
paraview
parmetis
paup
pcre
perl
petsc
pgi
phylobayes_mpi
pigz
poretools
portland
prottest
python
qiime
qiime2
quantumespresso
quorum
r
racon
raxml
ray
remora
repeatmasker
repeatmodeler
repet
rnnotator
root
ruby
rum
samtools
scalapack
siesta
sina
soapdenovo
soapdenovo2
soapdenovotrans
soapdenovo_trans
spades
sparsehash
sprng
sspace
stacks
stampy
stringtie
structure
subversion
swift
szip
tapir
tau
tginfo
tgusage
tophat
totalview
transabyss
trinity
t_coffee
uberftp
unicore
upc
valgrind
vcftools
velvet
visit
vmatch
vmd
vtune
wannier90
wien2k
wq
xdinfo
xdresourceid
xdusage
xsede
xz
zlib

The information in this database may not reflect all software available on HPC systems. If you do not see an application that you wish to use, or if you have questions about software that is currently available, please contact the HPC Help Desk.

Software Listing by Type


admin


application


application/bioinformatics


application/biology


application/cfd


application/chemistry


application/debugging


application/impi


application/math


application/md


application/others

cmg


application/physics


application/profiling

tau


application/tools


application/version control


application/visualization


library


library/io


library/math


library/mpi


lsuhpctools


programming/compiler


programming/languages


version control tool

git


xsede


Software Listing by Cluster