Alphabetical List of Software
a5_pipeline
abyss
aflowpi
agalma
amber
amos
ansys
ant
arpack
atlas
autodock
autodock_vina
autogrid
bazel
bbcp
beagle_lib
beast
beast2
bedtools
bio-align-gen
bio-align-rna
bio-assembly-gen
bio-assembly-trans
bio-gpu
bio-misc
bio-phylo
bio-pipeline
bio-recomb-eval
bio-seq-compare
bioperl
blast
blast+
blat
boost
bowtie
bowtie2
bwa
bzip2
caffe
canu
cap3
cd-hit
clhep
clonalframe
clonalorigin
cmake
cmg
comsol
cp2k
cpmd
cuda
cufflinks
curl
ddt
dendropy
dftbplus
dmtcp
easybuild
eigen
espresso
exabayes
expat
fasttree
fastx_toolkit
fftw
freeglut
gamess
garli
gate
gateway-usage-reporting
gatk
gaussian
gaussview
gcc
geant4
git
globus
gnuparallel
gnuplot
gromacs
gsl
gx-map
hdf5
hisat2
hmmer
hpx
hwloc
hypre
idba
ima2p
imagemagick
impi
intel
java
jdk
jellyfish
lammps
lapack
last
libgtextutils
lmdb
lsuhpctools
lucy
mafft
magma
mathematica
matlab
mauve
mcnpx
mercurial
metis
migrate
mira
mothur
mpich
mrbayes
mummer
mummer4
mumps
muscle
mvapich2
namd
ncbiblast
netcdf
netcdf_c++
netcdf_fortran
novoplasty
nwchem
oases
octave
openbabel
openfoam
openmpi
orthofinder
pacman
parallel_netcdf
paraview
parmetis
paup
pcre
perl
petsc
pgi
phylobayes_mpi
pigz
poretools
portland
prottest
python
qiime
qiime2
quantumespresso
quorum
r
racon
raxml
ray
remora
repeatmasker
repeatmodeler
repet
revbayes
rnnotator
root
ruby
rum
samtools
scalapack
siesta
sina
soapdenovo
soapdenovo2
soapdenovotrans
soapdenovo_trans
spades
sparsehash
sprng
sspace
stacks
stampy
stringtie
structure
subversion
swift
szip
tapir
tau
tginfo
tgusage
tophat
totalview
transabyss
trinity
t_coffee
uberftp
unicore
upc
valgrind
vcftools
velvet
visit
vmatch
vmd
vtune
wannier90
wien2k
wq
xdinfo
xdresourceid
xdusage
xsede
xz
zlib
The information in this database may not reflect all software available on HPC systems. If you do not see an application that you wish to use, or if you have questions about software that is currently available, please contact the HPC Help Desk.
Software Listing by Type
a5_pipeline
abyss
aflowpi
agalma
amber
amos
ansys
autodock
autodock_vina
autogrid
bazel
bbcp
beagle_lib
beast
beast2
bedtools
bioperl
blast
blast+
blat
boost
bowtie
bowtie2
bwa
bzip2
caffe
canu
cap3
cd-hit
clhep
clonalframe
clonalorigin
cmake
cmg
comsol
cuda
cufflinks
curl
ddt
dendropy
dftbplus
dmtcp
eigen
espresso
exabayes
expat
fasttree
fastx_toolkit
fftw
freeglut
garli
gatk
gaussian
gaussview
gcc
geant4
git
gnuparallel
gnuplot
gromacs
gsl
hdf5
hisat2
hmmer
hpx
hwloc
hypre
idba
ima2p
imagemagick
impi
intel
java
jdk
jellyfish
lammps
lapack
last
libgtextutils
lmdb
lucy
mafft
mathematica
matlab
mauve
mercurial
metis
mira
mothur
mpich
mrbayes
mummer
mummer4
mumps
muscle
mvapich2
namd
netcdf
netcdf_c++
netcdf_fortran
novoplasty
nwchem
oases
octave
openbabel
openfoam
openmpi
orthofinder
parallel_netcdf
paraview
parmetis
paup
pcre
perl
petsc
pgi
phylobayes_mpi
pigz
poretools
prottest
python
qiime
qiime2
quantumespresso
quorum
r
racon
raxml
ray
remora
repeatmasker
repeatmodeler
repet
revbayes
rnnotator
root
ruby
rum
samtools
scalapack
siesta
sina
soapdenovo
soapdenovo2
soapdenovotrans
soapdenovo_trans
spades
sparsehash
sprng
sspace
stacks
stampy
stringtie
structure
subversion
swift
szip
tau
tophat
totalview
transabyss
trinity
t_coffee
valgrind
vcftools
velvet
visit
vmatch
vmd
vtune
wannier90
wq
xz
zlib
admin
application
application/bioinformatics
bedtools
bio-align-gen
bio-align-rna
bio-assembly-gen
bio-assembly-trans
bio-gpu
bio-misc
bio-phylo
bio-pipeline
bio-recomb-eval
bio-seq-compare
dendropy
tapir
vcftools
application/biology
application/cfd
application/chemistry
application/debugging
application/impi
application/math
application/md
application/others
application/physics
application/profiling
application/tools
application/version control
application/visualization
library
library/io
library/math
library/mpi
lsuhpctools
programming/compiler
programming/languages
version control tool
xsede
ant
gateway-usage-reporting
globus
gx-map
java
pacman
perl
tginfo
tgusage
uberftp
unicore
xdinfo
xdresourceid
xdusage
xsede
Software Listing by Cluster
Qb2
amber
autodock
bazel
bbcp
beagle_lib
beast
bioperl
blast
boost
bowtie
bowtie2
bwa
bzip2
caffe
canu
cmake
cuda
cufflinks
curl
ddt
dftbplus
easybuild
espresso
fastx_toolkit
fftw
garli
gaussian
gcc
geant4
gnuparallel
gromacs
gsl
hdf5
hmmer
hwloc
hypre
idba
ima2p
impi
intel
java
jdk
lammps
lapack
libgtextutils
mafft
matlab
mauve
mercurial
metis
mira
mothur
mpich
mrbayes
mummer
mumps
muscle
mvapich2
namd
netcdf
netcdf_fortran
novoplasty
nwchem
oases
octave
openbabel
openfoam
openmpi
paraview
parmetis
paup
pcre
perl
petsc
pgi
pigz
poretools
python
qiime
r
racon
raxml
remora
revbayes
root
rum
samtools
scalapack
soapdenovo
soapdenovo_trans
spades
sparsehash
stacks
stampy
structure
subversion
szip
tau
tophat
totalview
trinity
valgrind
velvet
visit
vmatch
vmd
wq
xz
zlib
Smic
abyss
amber
amos
ansys
ant
bbcp
beast
blast
blat
boost
bowtie
bowtie2
bwa
bzip2
cmake
comsol
cuda
cufflinks
curl
ddt
easybuild
espresso
expat
fftw
gateway-usage-reporting
gaussian
gcc
git
globus
gnuparallel
gromacs
gsl
gx-map
hdf5
hmmer
hpx
hwloc
hypre
idba
impi
intel
java
jdk
lammps
lapack
mathematica
matlab
mauve
mercurial
metis
mira
mpich
mummer
mumps
muscle
mvapich2
namd
netcdf
netcdf_fortran
nwchem
oases
octave
openfoam
openmpi
pacman
paraview
parmetis
pcre
perl
petsc
pgi
pigz
python
r
ray
remora
rnnotator
rum
samtools
scalapack
siesta
soapdenovo
soapdenovo_trans
sparsehash
sprng
swift
szip
tau
tginfo
tgusage
tophat
totalview
uberftp
unicore
valgrind
velvet
vmatch
vtune
wq
xdinfo
xdresourceid
xdusage
xsede
xz
zlib
Supermike2
a5_pipeline
abyss
aflowpi
agalma
amber
amos
ansys
arpack
atlas
autodock
autodock_vina
autogrid
bbcp
beagle_lib
beast
beast2
bedtools
bio-align-gen
bio-align-rna
bio-assembly-gen
bio-assembly-trans
bio-gpu
bio-misc
bio-phylo
bio-pipeline
bio-recomb-eval
bio-seq-compare
blast
blast+
boost
bowtie
bowtie2
bzip2
cap3
cd-hit
clhep
clonalframe
clonalorigin
cmake
cmg
comsol
cp2k
cpmd
cuda
cufflinks
curl
ddt
dendropy
dmtcp
eigen
espresso
exabayes
expat
fasttree
fastx_toolkit
fftw
freeglut
gamess
gate
gatk
gaussian
gaussview
gcc
geant4
git
gnuparallel
gnuplot
gromacs
gsl
hdf5
hisat2
hmmer
hwloc
hypre
idba
imagemagick
impi
intel
jdk
jellyfish
lammps
lapack
last
libgtextutils
lmdb
lsuhpctools
lucy
mafft
magma
mathematica
matlab
mauve
mcnpx
metis
migrate
mira
mothur
mpich
mrbayes
mummer
mummer4
muscle
mvapich2
namd
ncbiblast
netcdf
netcdf_c++
netcdf_fortran
nwchem
oases
octave
openfoam
openmpi
orthofinder
parallel_netcdf
paraview
parmetis
pcre
perl
petsc
pgi
phylobayes_mpi
pigz
portland
prottest
python
qiime2
quantumespresso
quorum
r
raxml
remora
repeatmasker
repeatmodeler
repet
root
ruby
rum
samtools
scalapack
sina
soapdenovo2
soapdenovotrans
sparsehash
sprng
sspace
stringtie
subversion
swift
szip
tapir
tau
tophat
totalview
transabyss
trinity
t_coffee
upc
valgrind
vcftools
velvet
visit
vmatch
wannier90
wien2k
wq
xz
zlib