HPC Software
The information on this page may not reflect all software available on HPC systems. If you do not see an application that you wish to use, please visit this page for information on how to request it. Or if you have questions about software that is currently available, please contact the HPC Help Desk sys-help@loni.org.
Alphabetical List of Software
a5_pipeline
abyss
adios2
aflowpi
agalma
amber
amos
ansys
autodock
autodock-vina
autodock_vina
autogrid
bazel
bbcp
bdftopcf
beagle_lib
beast
beast2
bedtools
bioperl
blast
blast+
blast-legacy
blat
boost
bowtie
bowtie2
bwa
bzip2
caffe
canu
cap3
cd-hit
clhep
clonalframe
clonalorigin
cmake
cmg
comsol
cp2k
cuda
cufflinks
curl
ddt
dendropy
dftbplus
diffutils
dmtcp
easybuild
eigen
exabayes
expat
fasttree
fastx-toolkit
fastx_toolkit
fftw
font-util
fontconfig
fontsproto
freeglut
garli
gatk
gaussian
gaussview
gcc
geant4
git
gnuparallel
gnuplot
gperf
gromacs
gsl
hdf5
hisat2
hmmer
hpx
htslib
hwloc
hypre
idba
ima2p
imagemagick
impi
intel
java
jdk
jellyfish
kokkos
lammps
lapack
last
libbeagle
libcerf
libfontenc
libgd
libgtextutils
libidn2
libuuid
libxfont
libxpm
libzmq
lmdb
lucy
mafft
mathematica
matlab
mauve
mercurial
mesa
metis
mira
mkfontdir
mkfontscale
mothur
mpich
mpich2
mrbayes
mummer
mummer4
mumps
muscle
mvapich2
namd
nanopolish
netcdf
netcdf-c
netcdf-cxx
netcdf-fortran
netcdf_c++
netcdf_fortran
novoplasty
nwchem
oases
octave
openbabel
openfoam
openmpi
orca
orthofinder
parallel
parallel-netcdf
parallel_netcdf
paraview
parmetis
paup
pcre
pcre2
perl
petsc
pgi
phylobayesmpi
phylobayes_mpi
pigz
poretools
prottest
python
qiime
qiime2
quantum-espresso
quorum
r
racon
raxml
ray
remora
repeatmasker
repeatmodeler
repet
revbayes
rnnotator
root
ruby
rum
samtools
scalapack
scotch
siesta
sina
soapdenovo
soapdenovo-trans
soapdenovo2
soapdenovotrans
soapdenovo_trans
spades
sparsehash
sprng
sspace
stacks
stampy
star
stringtie
structure
subversion
suite-sparse
superlu-dist
swift
swig
szip
tau
tophat
totalview
transabyss
trinity
t_coffee
util-macros
valgrind
vcftools
velvet
visit
vmatch
vmd
vsearch
vtune
wannier90
wq
xproto
xtrans
xz
zlib
Software Listing by Cluster
Qb2
amber
autodock
bazel
bbcp
beagle_lib
beast
bioperl
blast
boost
bowtie
bowtie2
bwa
bzip2
caffe
canu
cmake
cuda
cufflinks
curl
ddt
dftbplus
easybuild
fastx_toolkit
fftw
garli
gaussian
gcc
geant4
gnuparallel
gromacs
gsl
hdf5
hmmer
hwloc
hypre
idba
ima2p
impi
intel
java
jdk
lammps
lapack
libgtextutils
mafft
matlab
mauve
mercurial
metis
mira
mothur
mpich
mrbayes
mummer
mumps
muscle
mvapich2
namd
netcdf
netcdf_fortran
novoplasty
nwchem
oases
octave
openbabel
openfoam
openmpi
orca
paraview
parmetis
paup
pcre
perl
petsc
pgi
pigz
poretools
python
qiime
quantum-espresso
r
racon
raxml
remora
revbayes
root
rum
samtools
scalapack
soapdenovo
soapdenovo_trans
spades
sparsehash
stacks
stampy
structure
subversion
szip
tau
tophat
totalview
trinity
valgrind
velvet
visit
vmatch
vmd
wq
xz
zlib
Qb3
adios2
amber
autodock-vina
bdftopcf
beast2
blast
boost
bowtie
bowtie2
bwa
cmake
cp2k
cuda
cufflinks
ddt
eigen
fastx-toolkit
fftw
font-util
fontconfig
fontsproto
gatk
gaussian
gcc
git
gnuplot
gperf
gromacs
hdf5
hmmer
hwloc
hypre
intel
jdk
kokkos
lammps
libbeagle
libcerf
libfontenc
libgd
libgtextutils
libidn2
libuuid
libxfont
libxpm
libzmq
matlab
mesa
metis
mkfontdir
mkfontscale
mothur
mpich
mrbayes
mumps
muscle
mvapich2
namd
netcdf-c
netcdf-cxx
netcdf-fortran
nwchem
octave
openbabel
openfoam
openmpi
parallel
parallel-netcdf
paraview
parmetis
pcre2
perl
petsc
pgi
python
quantum-espresso
r
raxml
revbayes
samtools
scotch
soapdenovo-trans
soapdenovo2
spades
suite-sparse
superlu-dist
swig
tau
trinity
util-macros
valgrind
vmd
xproto
xtrans
Smic
abyss
amber
amos
ansys
autodock-vina
bbcp
beast
beast2
blast
blast-legacy
blat
boost
bowtie
bowtie2
bwa
bzip2
cmake
comsol
cp2k
cuda
cufflinks
curl
ddt
diffutils
easybuild
eigen
exabayes
expat
fastx-toolkit
fftw
gatk
gaussian
gcc
git
gnuparallel
gnuplot
gromacs
gsl
hdf5
hmmer
hpx
htslib
hwloc
hypre
idba
impi
intel
jdk
lammps
lapack
libgtextutils
mathematica
matlab
mauve
mercurial
metis
mira
mothur
mpich
mummer
mumps
muscle
mvapich2
namd
netcdf
netcdf-c
netcdf-cxx
netcdf-fortran
netcdf_fortran
nwchem
oases
octave
openfoam
openmpi
parallel
parallel-netcdf
paraview
parmetis
pcre
perl
petsc
pgi
phylobayesmpi
pigz
python
quantum-espresso
r
raxml
ray
remora
revbayes
rnnotator
rum
samtools
scalapack
siesta
soapdenovo
soapdenovo-trans
soapdenovo_trans
sparsehash
sprng
star
superlu-dist
swift
szip
tau
tophat
totalview
valgrind
velvet
vmatch
vmd
vsearch
vtune
wq
xz
zlib
Supermike2
a5_pipeline
abyss
aflowpi
agalma
amber
amos
ansys
autodock
autodock_vina
autogrid
bbcp
beagle_lib
beast
beast2
bedtools
blast
blast+
boost
bowtie
bowtie2
bwa
bzip2
canu
cap3
cd-hit
clhep
clonalframe
clonalorigin
cmake
cmg
comsol
cuda
cufflinks
curl
ddt
dendropy
dmtcp
eigen
exabayes
expat
fasttree
fastx_toolkit
fftw
freeglut
gatk
gaussian
gaussview
gcc
geant4
git
gnuparallel
gnuplot
gromacs
gsl
hdf5
hisat2
hmmer
hwloc
hypre
idba
imagemagick
impi
intel
jdk
jellyfish
lammps
last
libgtextutils
lmdb
lucy
mafft
mathematica
matlab
mauve
metis
mira
mothur
mpich
mpich2
mrbayes
mummer
mummer4
muscle
mvapich2
namd
nanopolish
netcdf
netcdf_c++
netcdf_fortran
nwchem
oases
openmpi
orthofinder
parallel_netcdf
parmetis
pcre
perl
petsc
pgi
phylobayes_mpi
prottest
python
qiime2
quantum-espresso
quorum
r
raxml
repeatmasker
repeatmodeler
repet
revbayes
root
ruby
rum
samtools
sina
soapdenovo2
soapdenovotrans
sparsehash
sprng
sspace
stringtie
szip
tau
tophat
totalview
transabyss
trinity
t_coffee
valgrind
vcftools
velvet
vmatch
wannier90
xz
zlib