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LSU HPC Allocations Policy

1. System Allocations

LSU (Louisiana State University) maintains several high performance computing (HPC) systems. The machines currently include an IBM Power7-755 constellation, and several Intel Xeon-based x86 clusters. Detailed information on the various systems can be found on the HPC web site. LSU controls access to these resources via a formal user account and resource allocation processes. All decisions in these matters are made by the LSU HPC Resource Allocation Committee (HPCRAC), which is made up of faculty representatives from different discplines across LSU.

Gaining access to LSU HPC resources, be they computational time or data storage, involves a two step process. The first step requires applying for a system user, or login, account. The second step requires associating the user account with an allocation which provides the means for assigning, tracking, and limiting resource consumption. While the process is similar for computational time and storage space, there are separate policy documents for each. This particular document will focus on allocations for computational time.

An allocation of computational time is analogous to a bank account. It provides time that a user may expend as they see fit on one or more systems. When that time is consumed, no more work can be done until a new allocation is identified. Individuals who are awarded an allocation (called the principle investigator, or PI) have the ability to add users to their allocation account thus allowing multiple people to use one allocation. The PI consequently retains ultimate responsibility for who uses their allocation and how it is expended.

Computational allocations are awarded in units called service units (SU), where 1 SU corresponds to running a program for 1 wall clock hour on 1 processing core. How cores are associated with a program varies from system to system. All allocations are awarded for 1 year periods, and are considered active until they expire, even if the SU balance has gone to zero. As the policy will outline, there are limits on both the total allocation amounts, and number of active allocations a PI may hold at any given point in time.

For the purpose of computational allocations, only active LSU faculty members and permanent research staff may serve as a PI. Anyone may complete an application for an allocation, but there must be one or more individuals listed as co-PIs who meet the PI qualification. Requesting an allocation involves submission of a project proposal describing the intended usage and providing justification for the resource amounts requested. Actual submission is controlled by web pages on the HPC web site.

Once an allocation is awarded, the PI is granted access to tools which allow tracking of consumption, and management of the users who may charge against it. A code is provided which is used by the job batch system to determine how the job is charged for. The PI is responsible for all users authorized on an allocation, and has the option of formally delegating someone else to manage this process. It becomes the joint responsibility of the PI and the authorized user to make sure the appropriate allocation is expended, and for the purposes intended.

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2. Allocation Categories and Process

At the present time, allocations are awarded independent of machine, allowing users to run on any available LSU HPC platform. However, HPC resources are partitioned by category, and all standard allocation proposals go through the HPCRAC. The HPCRAC represents several distinct approval authorities: the Vice Chancellor for Research and Economic Development (VCRED), the Center for Computation & Technology (CCT) Director, the HPCRAC Chair, and the HPCRAC as a panel. This reflects the sponsorship and many intended uses for LSU HPC resources. The resources intended for each use are collected into 5 categories as shown in Table 1.

Table 1. Allocation Categories
Allocation Category Available Resources Allocation Authority
Economic Development 10% Vice-Chancellor for Research and Economic Development
Discretionary 10% Center for Computation and Technology Director
Default Allocation (2,000 SUs) 5% HPC@LSU Staff
Startup Allocation (2,000-50,000 SUs) 15% HPCRAC Chair
Research Allocation (> 50,000 SUs) 60% HPCRAC

To facilitate management of proposals, they will be assigned on of the following classes (Table 2).

Table 2. Proposal Classes
Class Description
Economic A proposal to assist commercial interests with the adoption of high performance computing as part of their business process. Awarded by the VCRED from the Economic Development resources. Economic allocations may be renewed by the VCRED.
Discretionary A proposal determined to be of value, but lying outside the normal allocation process. Awarded by the CCT Director from the Discretionary resources. Discretionary allocations may be renewed by the director.
Default Every user account, upon creation, receives a default allocation. This allows sufficient time for conventional processing on the systems, and developing information for potential formal proposals. These allocations are limited to 2,000 SUs. Default allocations are not renewable.
Startup A proposal requesting an allocation for the purpose of exploring the value of high performance computing for a new project. Only 2 startup allocations may be active at any time per PI. Startup allocation of 2,000 to 50,000 SUs are awarded by the Chair of HPCRAC.
Research A request for a large amount of time for a significant research project. May be awarded by simple majority agreement of the HPCRAC. Research requests are limited to 3 million SUs, and a PI may have a total of 5 million SUs active at any given time. Only faculty members and permanent research staff of LSU may serve as the PI for large Research allocations. Research allocations may be eligible for renewal by the HPCRAC.

All allocations have a duration of one year. Default and Startup allocations may be awarded at any time during the year, and Default allocations, in particular, are awarded on creation of a user account. Research allocations are granted at the beginning of every calendar quarter. Application deadlines for Research allocations are one month prior to the start date: January 1, April 1, July 1, and October 1. A PI may request, or be requested, to make a formal presentation to the HPCRAC in conjunction with the proposal submission. At the end of any allocation, a short summary report is required by the HPCRAC. Missing reports may delay proposal processing. Any request for allocation renewal must include a summary report, including renewals for startup allocations. The summary should indicate if the goals of the proposed work were accomplished, any major results, and a list of any publications and presentations that result.

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2.1. Startup and Research Allocation Requests and Renewals

2.1.1. Startup Allocations (<50,000 SUs)

Who may apply:Any LSU student, faculty member, postdoc, or research staff member whose activities require access to HPC resources (for research or class instruction) may apply for a Startup allocation. At least one qualified PI must be included as a co-PI on the proposal. Any limitations on the number of simultaneous Startup allocations will apply. Startup allocations of up to 50,000 SUs may be requested.

How to apply: Applicants should submit an application using the HPC web interface. The text provided should to briefly explain their need for computation time on an HPC platform, their methodology, and the current state of their codes or application. Allocation requests from students, postdocs, and research staff with term appointments must include a qualified PI who agrees to assume oversight responsibility for the proposed project.

Review and Awards: Startup allocations may be made at any time throughout the year. Default allocations (2,000 SUs) generally will be awarded by HPC staff, once an applicant’s identity and LSU affiliation has been verified and, as appropriate, the application has been approved by the faculty member with oversight responsibility. The computationally-driven activities of any individual whose HPC resource needs exceed 2,000 SUs in a given year may be subject to a review by the Chair of HPCRAC - following review, the individual’s startup allocation may be increased to a level not to exceed 50,000 SUs, or the user may be moved under the umbrella of an existing “Research group” and thereafter be subjected to the allocation limits of that group.

Renewals Upon request, startup allocations may be renewed annually; renewal applications should be accompanied by a summary report including a list of publications and presentations in which the use of LSU HPC resources has been acknowledged.

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2.1.2. Research Allocations (>50,000 SUs)

Who may apply: Anyone may apply for a Research allocation on behalf of a research or operational group in support of a well-defined compute-intensive project, so long as the applicant or one of the co-PIs meets the PI qualifications. Once awarded, such an allocation will then be shared among that group with the PI taking responsibility for ensuring that the allocation is utilized effectively (at an appropriately measured pace) throughout the year.

How to apply: A request for an allocation requires that a formal proposal be submitted via the HPC web interface to the HPCRAC. The proposal is expected to be 5 pages or less, and concentrate on justifying the computational resources requested. The follow outline should be followed:

  1. Problem Statement – Section limited to 1 page, or less, describing the desired outcomes of the project.
  2. Background – Section limited to 1 page, or less, describing how the resources will be used to address the problem (i.e. student access for course work, specific models, etc).
  3. Methodology – Section limited to 1 page, or less, describing the computational methodology that will be used. This should include the applications required.
  4. Research Plan – Section limited to 1 page, or less, describing the research schedule, including the anticipated expenditure of granted resources. Allocations are assumed to be uniformly consumed over their lifetime. If this will not be the case, an estimate of expenditure by quarters is required.
  5. Requirements Analysis - Section limited to 2 pages, or less, detailing the basis for the requested computer time. Large allocations must exhibit an understanding of application efficiency, scaling, and provide accurate estimations of the time requirements.

Please note that the maximum proposal page limit is 5, not including summary reports in the Attachments. The page limit was chosen with an eye to making it relatively easy to compose an allocation request, or to modify and reuse a successful application made to another center. Additional information may be attached as addendums, such as copies of awarded grants which will be supported by the requested resources.

Review and Awards: Applications for a Research allocation will undergo competitive peer review and will be allocated quarterly by the HPCRAC. Requests will be granted – in whole or in part – based on the availability of HPC resources and based upon the description of the proposed activities and the appropriate use of technology, with priority given to funded projects. Allocation decisions made by the HPCRAC are deemed final. Unresolved appeals will be directed to the Vice Chancellor for Research & Economic Development (VCRED).

Renewals: Renewal allocations follow the same process as all other allocations. Proposal writers should be aware that both past usage history and submission of progress reports will be considered in the award determination. Applications for allocation renewals should ideally cite peer reviewed publications that acknowledge LSU HPC resources and only require an updated version of a previously successful application.

LSU welcomes members of other institutions that are collaborating with LSU researchers to use LSU resources, but they cannot be the PI requesting standard allocations or granting access. For the PI role, Adjunct and Visiting professors do not qualify. They must ask a collaborating fulltime professor or research staff member located at LSU to sponsor them and any additional researchers.

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2.2. Director's Discretionary Allocation Request (submit to CCT Director)

Each calendar year, up to 10% of the available HPC resources will be allocated at the discretion of the CCT Director and the Chief Information Officer (CIO). Allocations made from this pool will be for a period not to exceed one year. Awardees will be expected to work in conjunction with CCT or HPC@LSU technical staff to ensure that project implementations are in line with and strengthen the CCT's broad interdisciplinary mission. At the termination of a project (or annually, if an award is extended beyond one year) awardees shall provide a summary report of project activities along with a list of publications and presentations in which the use of LSU HPC resources has been acknowledged.

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2.3. Economic Development or 'On Demand' Allocation Request (submit to VCRED)

The VCRED, in consultation with the chair of the HPCRAC and the CCT Director, may grant Economic Development or On Demand access to HPC resources for high priority projects like render farm for economic development purposes, hurricane storm surge modeling, or other possible operational responsibilities that are deemed sufficiently different from standard research proposals. Each calendar year, up to 10% of the available HPC resources may be allocated by the VCRED. At the termination of a project (or annually, if an award is extended beyond one year) awardees shall provide a summary report of project activities along with a list of publications and presentations in which the use of LSU HPC resources has been acknowledged.

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2.4. Allocation Management

An allocation is considered valid so long as a positive resource balance remains, and the expiration date has not been exceeded. Once an allocation expires, or has been fully consumed, users accounts will be blocked from submitting work against the allocation. There is no mechanism for extending an allocation beyond one year, nor for adding resources once an allocation has been expended.

User accounts must be associated with a valid allocation, and if not, will be retained for a maximum of 1 year pending authorization against a renewed or different allocation. With these restrictions in mind, the PI is required to use the tools provided to monitor system usage and control authorization of project member accounts. PIs are strongly advised to carefully budget their usage appropriately throughout the year. Automatic reminder emails will be sent by the management system as an allocation nears expiration. PIs are ultimately responsible for assuring that a current and actively monitored management email address has been assigned to each allocation.

At the end of any allocation, a short summary report must be submitted to the allocation committee. Failure to submit this report may be used in the consideration of future allocations. The report may simply reference any formal publications and presentations that resulted from using HPC resources, or provide a high level overview of what was accomplished.

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2.5. Early Allocation Access

If a PI who has already been awarded a large Research allocation by HPCRAC puts in a new request, and there is a good reason to start the project before the next cycle, then the Chair of HPCRAC can instruct the HPC@LSU staff to award as much as 25% of the project request. Justification must be provided in the renewal proposal. The HPCRAC committee would be made aware of this action and its reasons by the Chair of HPCRAC using the "LSU HPC Allocations" email list.

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3. Machine Access Policy

3.1. Job Queueing

Various workload balancing algorithms are used to determine how jobs are assigned resources on a given machine. The way a job is handled is determined by the job queue it is submitted to. Efficient use of the queuing system requires that users request runtimes consistent with estimated runtimes of their jobs. In particular, requesting more time than is necessary for a particular job can lead to inefficient and unfair queuing. Therefore, users that routinely request more time than is needed for their jobs are subject to a priority penalty that will lower the priority of their jobs. Each system sets a maximum number of jobs that a single user may have running without special permission (see below). There is no limit to the number of jobs that a particular user may have queued. Users that wish to obtain a higher priority for their jobs may use special priority queues (see below).

The available processors are currently divided into 2 architecture specific groups: IBM P5-575 and P7-755 systems running AIX, and Intel x86 systems running Linux. The processors in each group are further subdivided into preemptory and dedicated pools. Certain mission critical applications, such as storm surge prediction during a hurricane threat, are granted immediate access to processors in the preemptory pool. Processors in the dedicated pool are used to run all other job types. The processors are accessed through different job queues. There are 5 job queues which use different combinations of the processor pools, and allow for different job characteristics.

  • Preempt Queue: The preempt queue controls access to the preemptory pool. Authorized applications submitted to this queue will cause the termination of all other user applications running on preemptory nodes.
  • Checkpt Queue: The checkpt queue controls access to nodes in both the dedicated and preemptory pool. Jobs running in this queue may be subject to termination by the preempt queue, thus are implicitly assumed to support restarts based on periodically saved information. No refunds of lost SUs are offered if jobs in the checkpt queue are terminated by preemption. The user running jobs without restart capability assume this risk. However, the benefits from using this queue include access to larger numbers of nodes, and/or faster throughput, depending on how busy the queue is.
  • Workq: The workq queue controls access to nodes in the dedicated pool. Jobs in the work queue will run until they terminate as planned, their requested run time has expired, or they stop due to an abnormal system failure. Jobs which are terminated due to system errors beyond the user's control may be subject to refund of expended SUs. Poor planning is not considered grounds for a refund.
  • Interactive Queue: The interactive queue gives real-time access to jobs for on-line analysis or debugging, but only allows very short run times. It supports development work, but not production.
  • Priority Queue: The priority queue controls nodes in the dedicated pool, but allows applications to be given higher priority with prior approval. Approval may be granted during training sessions, for demonstration purposes, or other special needs. The SUs charged will be adjusted by a factor of 1.3, and no more than 20% of an allocation may be expended in the queue. Requests for priority access should be directed to sys-help@loni.org. This queue does not impact other running user jobs, but will delay the start of lower priority jobs already in the queue.

Note: The named queues do not necessarily exist on all machines, and the maximum time allowed in the queues will vary from machine to machine. For system specific information, please refer to the architecture group Running Jobs pages on the HPC@LSU documentation web site.

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3.2. Storage

Currently disk space usage is controlled via user quotas rather than on a per-project basis. Storage may become an allocated resource in the future. At such time, a request for storage space will be required in the allocation request. At the current time, an estimate of required space is requested.

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3.3. Special Requests

A request for special access to LSU HPC machines (such as usage of all nodes on a machine or exceptionally long runs) must be explicitly stated in the proposal for HPC resources. Appeals to the decision of the HPCRAC may be made to the VCRED.

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4. HPC Resources Allocation Committee Members

The proposed HPCRAC members are shown in Table 3. The CCT Director, in consultation with the VERED, appoints the Chair of HPCRAC. The HPCRAC is chartered approval authority allocating HPC resources, and charged with the task of adopting the HPC Resources Allocations Policy and reporting its activities and recommendations to VCRED.

Table 3. LSU HPCRAC Members
Name Department Contact Email
Honggao Liu (Chair) CCT honggao@cct.lsu.edu
Juana Moreno Physics moreno@phys.lsu.edu
Jim Q. Chen Civil & Environmental Engineering qchen@lsu.edu
Shawn W. Walker Mathematics walker@math.lsu.edu
Krishnaswamy Nandakumar Chemical Engineering nandakumar@lsu.edu
Jeremy Brown Biological Sciences jembrown@lsu.edu
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5. Terminology

Summary report: This report should be a maximum of 5 pages and should include the following information:

  • Principal user information [PI] (name, status, department, phone, email, institution [if different from LSU]
  • Summarize the nature of the LSU-sponsored research in a non-technical fashion, suitable for public consumption. (Approximately one page; no more than two pages)
  • Describe any potential applications of the research to industry or government.
  • Describe any use of this allocation to encourage education in computational science, and particularly the level of student involvement and any HPC elements incorporated into formal courses.

Definition of Service Unit (SU): Currently, one SU corresponds to one hour of wall-clock time on one processing core. A single machine will have multiple nodes (individual servers) available, and multiple cores within each node. This allows many cores to be used for a single parallel processing job, but can lead to not-so-obvious charges. For example, running for 1 hour using 8 cores on an 8-core node consumes 8 SUs. On the other hand, running for 1 hour on 1 core of the same 8 core node, which allows the single core to access all of the node memory, also consumes 8 SUs. In simple terms, the number of cores that are reserved for a job, and hence are unavailable to others, is the number used to calculate SU usage.

HPC resources at LSU will be allocated/charged according to the number of “service units (SUs)” required/used, where:

    # SUs = m * #Nodes * Wall_Time,

and,

    m = number of processing cores per Node;

    Wall_Time = Total Wall Clock Hours.

For example, if a machine has 4 processing cores per Node (m = 4), a program that ran for 24 hours on 32 nodes required 4*32*24 = 3072 SUs.

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Last revised: 19 February 2014