Skip to main content

Publications

  • C., J. R. White, C. Chen, H. Lin, E. Weeks, K. Galvan, and S. Bargu, "Summertime Tidal Flushing of Barataria Bay: Transports of Water and Suspended Sediments", Journal of Geophysical Research - Oceans, 116, C04009 (2011).
  • Unjong Yu, Abdol-Madjid Nili, Karlis Mikelsons, Brian Moritz, Juana Moreno, Mark Jarrell, "Nonlocal Effects on Magnetism in the Diluted Magnetic Semiconductor GaMnAs.", Phys. Rev. Lett., 104, 037201 (2010).
  • Shizhong Yang, Guang-Lin Zhao, Ebrahim Khosravi, "First Principles Studies of Nitrogen Doped Carbon Nanotubes for Dioxygen Reduction.", J. Phys. Chem. C, 114 (8), 3371–3375 (2010).
  • O'Connor, Evan, Ott, Christian D., "A New Open-Source Code for Spherically-Symmetric Stellar Collapse to Neutron Stars and Black Holes.", eprint arXiv, 0912.2393, (2010).
  • Lior M. Burko, Gaurav Khanna, "Late-time Kerr tails: generic and non-generic initial data sets, 'up' modes, and superposition.", Phys. Rev. D, , (2010).
  • X. Sun, C.D. Wick, L.X. Dang, "Computational Studies of Aqueous Interfaces of SrCl_2 Salt Solutions.", J. Phys. Chem. B, 113, 13993-13997 (2009).
  • Wendong Wang, Zhenjun Wang, Jinke Tang, Shizhong Yang, Hua Jin, Guang-Lin Zhao, Qiang Li, "Seebeck coefficient and thermal conductivity in doped C60.", Journal of Renewable and Sustainable Energy, 1, 023104 (2009).
  • Wei Huang, Joohyun Kim, Shantenu Jha, Fareed Aboul-ela, "A mechanism for S-adenosyl methionine assisted formation of a riboswitch conformation: a small molecule with a strong arm.", Nucleic Acids Res., 37(19), 6528-6539 (2009).
  • Wei Huang, Joohyun Kim, Shantenu Jha, Fareed Aboul-ela, Vamsi Boyapati, "Dynamics differences of SAM-I riboswitch aptamer between SAM bound and without SAM: insight into conformational rearrangement.", FASEB J., 23, 842.1 (2009).
  • Tae-Woo Lee, Sean D. Huver, Hwang Lee, Lev Kaplan, Steven B. McCracken, Changjun Min, Dmitry B. Uskov, Christoph F. Wildfeuer, Georgios Veronis, Jonathan P. Dowling, "Optimization of quantum interferometric metrological sensors in the presence of photon loss.", Phys. Rev. A, 80, 063803 (2009).
  • Steven Brandt, Matthew Kemp, Gabrielle Allen, Matthew Eastman, Erik Schnetter, "Dynamic deployment of a component framework with the Ubiqis system.", Submitted to Euro-Par, , (2009).
  • Sajo E, Geng J, Chambers P, Donahue K, Nielsen BJ, Hampel J, "Computational Aerosol Transport Simulation of Military Airlocks.", Proceedings of Chemical and Biological Defense Science and Technology Conference, Dallas, TX, November 16-20, 167-168 (2009).
  • Promita Chakraborty, Shantenu Jha, Daniel S. Katz, "Novel Submission Modes for Tightly-Coupled Jobs Across Distributed Resource for Reduced Time-to-Solution.", To appear in, Philosophical Transactions of the Royal Society A, , (2009).
  • Ott, Christian D, "TOPICAL REVIEW: The gravitational-wave signature of core-collapse supernovae.", Classical and Quantum Gravity, 26(6), 063001 (2009).
  • Ott, Christian D., "Probing the core-collapse supernova mechanism with gravitational waves.", Classical and Quantum Gravity, 26(20), 204015 (2009).
  • Murphy, Jeremiah W., Ott, Christian D., Burrows, Adam, "A Model for Gravitational Wave Emission from Neutrino-Driven Core-Collapse Supernovae.", The Astrophysical Journal, 707(2), 1173-1190 (2009).
  • Lawrence M. Pratt, Phuong Thao Thi Tran, Ngan Van Nguyen, Bala Ramachandran, "Cyclopropanation Reactions of Halomethyllithium Carbenoids: A Computational Study of the Effects of Aggregation and Solvation.", Bull. Chem. Soc. Jpn., 82(9), 1107-1125 (2009).
  • L. Duan, B. Li , L. Peng, "Versatile Prediction and Fast Estimation of Architectural Vulnerability Factor from Processor Performance Metric.", In Proceeding of the 15th IEEE International Symposium on High-Performance Computer Architecture (HPCA-15), Raleigh, NC, Feb. 2009., , (2009).
  • L. Baiotti, B. Giacomazzo, L. Rezzolla, "Accurate evolutions of inspiralling neutron-star binaries: assessment of the truncation error.", Class. Quantum Grav., 26, 114005-1~13 (2009).
  • IceCube Collaboration, "The IceCube Data Acquisition System: Signal Capture, Digitization, and Timestamping.", Nuclear Instruments and Methods, A601, 294-316 (2009).
  • IceCube Collaboration, "The Hunt for Cosmic Neutrino Sources with IceCube.", Proceedings of the 6th Workshop on Science with the New Generation of High Energy Gamma-Ray Experiments, Euganean Spa Area, Padova, 8-10 October 2008, AIP Conference Proceedings 1112 (2009), 138-147 (2009).
  • IceCube Collaboration, "Search for Point Sources of High Energy Neutrinos with Final Data from AMANDA-II.", Physical Review, D79, 062001 (2009).
  • IceCube Collaboration, "Search for Muon Neutrinos from Gamma-Ray Bursts with the IceCube Neutrino Telescope.", e-print archive arXiv, 0907.2227 [astro-ph.HE], 13 July (2009).
  • IceCube Collaboration, "Search for High-Energy Muon Neutrinos from the "Naked-Eye" GRB 080319B with the IceCube Neutrino Telescope.", Astrophysical Journal, 701, 1721-1731 (2009).
  • IceCube Collaboration, "Recent Results from IceCube and AMANDA.", Proceedings of the 2009 Meeting of the Division of Particles and Fields of the American Physical Society (DPF-2009), Detroit, MI, USA, 26-31 July 2009, eConf C090726, e-print archive arXiv, 0910.0215 [astro-ph.HE], 19 October 2009 (2009).
  • IceCube Collaboration, "Prospects for Dark Matter Detection with IceCube in the Context of CMSSM.", Journal of Cosmology and Astroparticle Physics, 08, 034 (2009).
  • IceCube Collaboration, "Neutrino Astronomy with IceCube.", Modern Physics Letters, A24, 1543-1557 (2009).
  • IceCube Collaboration, "Measurement of Sound Speed vs. Depth in South Pole ice for Neutrino Astronomy.", e-print archive arXiv, 0909.2629 [astro-ph.IM], 14 September 2009, (2009).
  • IceCube Collaboration, "Limits on the WIMP-Nucleon Scattering Cross-Section from Neutrino Telescopes.", Journal of Cosmology and Astroparticle Physics, 04, 009 (2009).
  • IceCube Collaboration, "Limits on a Muon Flux from Neutralino Annihilations in the Sun with the IceCube 22-string Detector.", Physical Review Letters, 102, 201302 (2009).
  • IceCube Collaboration, "Limits on a Muon Flux from Kaluza-Klein Dark Matter Annihilations in the Sun from the IceCube 22-string Detector.", e-print archive arXiv, 0920.4480 [astro-ph.CO], 23 October 2009, (2009).
  • IceCube Collaboration, "First Neutrino Point-Source Results From the 22 String IceCube Detector.", Astrophysical Journal Letters, 701, L47-L51 (2009).
  • IceCube Collaboration, "Extending the Search for Neutrino Point Sources with IceCube above the Horizon.", e-print archive arXiv, 0911.2338 [astro-ph.HE], 12 November 2009, accepted for publication in Physical Review Letters, 8 November 2009 (2009).
  • IceCube Collaboration, "Determination of the Atmospheric Neutrino Flux and Searches for New Physics with AMANDA-II.", Physical Review D, 79, 102005 (2009).
  • E. Karadogan, C.S. Willson, C.R. Berger, "Numerical Modeling of the Lower Mississippi River—Influence of Forcings on Flow Distribution and Impact of Sea Level Rise on the System.", Proceedings of the OCEANS 2009 MTS/IEEE Conference, Biloxi, Mississippi, USA October 26-29, , (2009).
  • Dylan C. Yost, Thomas R. Schibli, Jun Ye, Jennifer L. Tate, James Hostetter, Mette B. Gaarde, Kenneth J. Schafer, "Vacuum-ultraviolet frequency combs from below-threshold harmonics.", Nature Phys., 5, 815-820 (2009).
  • Duez, Matthew D., Foucart, Francois, Kidder, Lawrence E., Ott, Christian D., Teukolsky, Saul A., "Equation of state effects in black hole-neutron star mergers.", eprint arXiv, 0912.3528, (2009).
  • Dessart, L., Ott, C. D., Burrows, A., Rosswog, S., Livne, E., "Neutrino Signatures and the Neutrino-Driven Wind in Binary Neutron Star Mergers.", The Astrophysical Journal, 690(2), 1681-1705 (2009).
  • David Brown, Peter Diener, Olivier Sarbach, Erik Schnetter, Manuel Tiglio, "Turduckening black holes: an analytical and computational study.", Phys. Rev. D, 79, 044023 (doi:10.1103/PhysRevD.79.044023) (2009).
  • David Brown, Peter Diener, Olivier Sarbach, Erik Schnetter, Manuel Tiglio, "Turduckening black holes: an analytical and computational study.", Phys. Rev. D, 79, 044023 (doi:10.1103/PhysRevD.79.044023) (2009).
  • Cheri A. McFerrin, Barry Dellinger, Randall W. Hall, "Ab Initio Study of the Formation & Degradation Reactions of Chlorophenol.", Journal of Molecular Structure: Theochem, (accepted for publication), . (2009).
  • C.D. Wick, "Electrostatic dampening dampens the anion propensity for the air-water interface.", J. Chem. Phys., 131, 084715 (2009).
  • C.D. Wick, L.X. Dang, "Investigating hydroxide anion interfacial activity by classical and multi-state empirical valence bond molecular dynamics simulations.", J. Phys. Chem. A, 113, 6356-6364 (Cover article) (2009).
  • Bryan C. Carstens, Holly N. Stoute, Noah M. Reid, "An information-theoretical approach to phylogeography.", Molecular Ecology, 18, 4270–4282 (2009).
  • Benjamin Aylott, John G. Baker, William D. Boggs, Michael Boyle, Patrick R. Brady, Duncan A. Brown, Bernd Brügmann, Luisa T. Buchman, Alessandra Buonanno, Laura Cadonati, Jordan Camp, Manuela Campanelli, Joan Centrella, Shourov Chatterji, Nelson Christensen, Tony Chu, Peter Diener, Nils Dorband, Zachariah B. Etienne, Joshua Faber, Stephen Fairhurst, Benjamin Farr, Sebastian Fischetti, Gianluca Guidi, Lisa M. Goggin, Mark Hannam, Frank Herrmann, Ian Hinder, Sascha Husa, Vicky Kalogera, Drew Keppel, Lawrence E. Kidder, Bernard J. Kelly, Badri Krishnan, Pablo Laguna, Carlos O. Lousto, Ilya Mandel, Pedro Marronetti, Richard Matzner, Sean T. McWilliams, Keith D. Matthews, R. Adam Mercer, Satyanarayan R. P. Mohapatra, Abdul H. Mroué, Hiroyuki Nakano, Evan Ochsner, Yi Pan, Larne Pekowsky, Harald P. Pfeiffer, Denis Pollney, Frans Pretorius, Vivien Raymond, Christian Reisswig, Luciano Rezzolla, Oliver Rinne, Craig Robinson, Christian Röver, Lucía Santamaría, Bangalore Sathyaprakash, Mark A. Scheel, Erik Schnetter, Jennifer Seiler, Stuart L. Shapiro, Deirdre Shoemaker, Ulrich Sperhake, Alexander Stroeer, Riccardo Sturani, Wolfgang Tichy, Yuk Tung Liu, Marc van der Sluys, James R. van Meter, Ruslan Vaulin, Alberto Vecchio, John Veitch, Andrea Viceré, John T. Whelan, Yosef Zlochower, "Testing gravitational-wave searches with numerical relativity waveforms: Results from the first Numerical INJection Analysis (NINJA) project..", arXiv, 0901.4399 [gr-qc], (2009).
  • B. Giacomazzo, L. Rezzolla, L. Baiotti, "The influence of magnetic fields on the gravitational-wave emission from binary neutron stars.", MNRAS Letters, 399, L164-L168 (2009).
  • Abdikamalov, E. B., Ott, C. D., Rezzolla, L., Dessart, L., Dimmelmeier, H., Marek, A., Janka, H. -T., "Axisymmetric General Relativistic Simulations of the Accretion-Induced Collapse of White Dwarfs.", eprint arXiv, 0910.2703, (2009).
  • Yang X, Dillon RH, Fauci LJ., "An integrative computational model of multiciliary beating.", Bull Math Biol. 2008 May, 70(4), 1192-215 Epub 2008 Jan 31. http://www.ncbi.nlm.nih.gov/sites/entrez?term=xingzhou (2008).
  • Wei Huang, Fareed Aboul-ela, Shantenu Jha, Vamsi Boyapati, "Computational study of conformational switching of s-box riboswitch.", 235th ACS National Meeting, April 6-10, 2008, New Orleans, LA. BIOL-182, poster presentation., , (2008).
  • Tomas Dytrych, Kristina D. Sviratcheva, Chairul Bahri, Jerry P. Draayer , James P. Vary, "Highly deformed modes in the ab initio symplectic no-core shell model.", J. Phys. G: Nucl. Part. Phys., 35, 095101 (2008).
  • Thompson K.E., Willson C.S., White C.D., Nyman S., Bhattacharya J.P., A.H. Reed, "Application of a new grain-based reconstruction algorithm to microtomography images for quantitative characterization and flow modeling.", SPE Journal, 13(2), 164-176 (2008).
  • T. Dytrych, K. D. Sviratcheva, J. P. Draayer, C. Bahri, J. P. Vary, "Ab initio symplectic no-core shell model.", J. Phys. G: Nucl. Part. Phys., 35, 123101. (2008).
  • Summerscales, T. Z., Burrows, Adam, Finn, Lee Samuel, Ott, Christian D., "Maximum Entropy for Gravitational Wave Data Analysis: Inferring the Physical Parameters of Core-Collapse Supernovae.", The Astrophysical Journal, 678(2), 1142-1157 (2008).
  • Shantenu Jha, Andre Merzky, Geoffrey Fox, "Using Clouds to Provide Grids Higher-Levels of Abstraction and Explicit Support for Usage Mode.", submitted to, Concurrency and Computing: Practise and Experience, , (2008).
  • S. Kodiyalam, M.D. Robert, I.A. Sigal, R.T. Hart, C.F. Burgoyne, J.C.Down, "Large Scale Voxel-based Finite element Modeling of Normal andEarly Glaucomatous Monkey Lamina Cribrosa.", Proceedings of the ASME 2008Summer Bioengineering Conference, June 25-29, Marco Island, Florida., , (2008).
  • S. Bhattacharya, B. Coasne, F. R. Hung , K. E. Gubbin, "Molecular modeling of templated mesoporous materials, SBA-15: From mesoscopic to molecular models to gas adsorption.", Langmuir (Article ASAP, 2008), http://dx.doi.org/10.1021/la801560e, (2008).
  • Ricky B. Nellas , Bin Chen, "Towards understanding the nucleation mechanism for multi-component systems: An atomistic simulation of the ternary nucleation of water/n-nonane/1-butanol.", Phys. Chem. Chem. Phys., 10, 506-514 (2008).
  • Ricky B. Nella, Samuel J. Keasler, Bin Chen, "Molecular content and structure of aqueous organic nanodroplets from the vapor-liquid nucleation study of the water/n-nonane/1-alcohol serie.", J. Phys. Chem. A, 112, 2930-2939 (2008).
  • Promita Chakraborty, Shantenu Jha, "Design and Performance Analysis of a Distributed HPC Molecular Dynamics Code on Distributed Resource.", ACM SIGAPP 15th Mardi Gras Conference, 30 Jan - 2 Feb, 2008, Baton Rouge, Louisiana., , (2008).
  • NP de Koker, Lars Stixrude, BB Karki, "Thermodynamics, structure, dynamics, and freezing of Mg2SiO4 liquid at high pressure.", Geochimica et Cosmochimica Acta, 72, 1427-1441 (2008).
  • M. Mookherjee, Lars Stixrude, BB Karki, "Hydrous silicate melt at high pressure.", Nature, 452, 983-986. (2008).
  • Luciano Rezzolla, Peter Diener, Ernst Nils Dorband, Denis Pollney, Christian Reisswig, Erik Schnetter, Jennifer Seiler, "The final spin from the coalescence of aligned-spin black-hole binarie.", Astrophys. J. Lett., 674, L29-L32 (doi:10.1086/528935). (2008).
  • Jian Tao, Gabrielle Allen, Ian Hinder, Erik Schnetter, Yosef Zlochower, "XiRel: Standard benchmarks for numerical relativity codes using Cactus and Carpet.", Technical Report CCT-TR-2008-5, Louisiana State University, 2008, , (2008).
  • Jha Khamra, Kaiser Merzky and Weidner, "Developing Adaptive Scientific Applications with Hard to Predict Runtime Resource Requirement.", Proceedings of TeraGrid 2008, Winner of Performance Challenge Award at TeraGrid 08, , (2008).
  • H. Pham, D. Cimpoesu, A. Stancu, L. Spinu, "Switching behavior of a Stoner-Wohlfarth particle subjected tospin-torque effect.", J. Appl. Phys., 103(7), 07B105-1-3 (2008).
  • H. Pham, D. Cimpoesu, A. Stancu, L. Spinu, "Switching behavior of a Stoner-Wohlfarth particle subjected to spin-torque effect.", 2008 American Physical Society (APS) March Meeting, March 10-14, New Orleans, Louisiana, paper D32.00001 - oral presentationhttp://meetings.aps.org/Meeting/MAR08/Event/76356, , (2008).
  • H. Pham, D. Cimpoesu, A. Stancu, L. Spinu, "Dynamic and temperature effects in spin-transfer switching.", Intermag 2008 Conference, May 4-8, 2008, Madrid, Spain, paper CN-01, , 419 - poster presentation (2008).
  • Guang-Lin Zhao, Shizhong Yang, Diola Bagayoko, Jinke Tang, Zhenun Wang, "Electronic structure of C60 semiconductors under controlled dopingwith B, N, and Co atom.", Diamond & Related Materials, 17, 749–752. (2008).
  • G.K.P. Dathara , Mainardi D.S., "Structure and Dynamics of Ti-Al-HCompounds in Ti-Doped NaAlH4.", Molecular Simulation, 34(2), 201-210 (2008).
  • Frank Muldoon, "Control of a Simplified Unsteady Film-cooling Flow Using Gradient-basedOptimization.", accepted Feb. 8 2008, AIAA Journal., , (2008).
  • Frank Muldoon, "Control of a Simplified Unsteady Film-cooling Flow Using Gradient-based Optimization.", AIAA Journal, 46(10), 2443-245 (2008).
  • Erik Schnetter, "Multi-physics coupling of Einstein and hydrodynamics evolution: A case study of the Einstein Toolkit.", CBHPC 2008 (Component-Based High Performance Computing), , (2008).
  • Erik Schnetter, Gabrielle Allen, Tom Goodale, Mayank Tyagi, "Alpaca: Cactus tools for application level performance and correctness analysis..", Technical Report CCT-TR-2008-2, Louisiana State University, 2008., , (2008).
  • Erik Schnetter, Christian D. Ott, Peter Diener, Christian Reisswig, "Astrophysical applications of numerical relativity — from Teragrid to Petascale..", The 3rd annual TeraGrid Conference, TeraGrid '08, , (2008).
  • Erik Schnetter, Christian D. Ott, Peter Diener, Christian Reisswig, "Astrophysical applications of numerical relativity — from Teragrid to Petascale.", The 3rd annual TeraGrid Conference, TeraGrid '08 (accepted), , (2008).
  • Dimmelmeier, Harald, Ott, Christian D., Marek, Andreas, Janka, H.-Thomas, "Gravitational wave burst signal from core collapse of rotating stars.", Physical Review D, 78(6), 064056 (2008).
  • Dessart, L., Burrows, A., Livne, E., Ott, C. D., "The Proto-Neutron Star Phase of the Collapsar Model and the Route to Long-Soft Gamma-Ray Bursts and Hypernovae.", The Astrophysical Journal, 673(1), L43-L46 (2008).
  • D. H. Leedom, S. Acharya, "Large Eddy Simulations of Film Cooling Flow Fields from Cylindrical and Shaped Hole.", Proceedings of ASME Turbo Expo 2008: Power for Land, Sea and Air GT2008 June 9-13, 2008, Berlin, Germany, , (2008).
  • D. Cimpoesu, H. Pham, A. Stancu, L. Spinu, "Dynamic and temperature effects in spin-transfer switching.", 2008 American Physical Society (APS) March Meeting, March 10-14, New Orleans, Louisiana, paper A15.00006 - oral presentationhttp://meetings.aps.org/Meeting/MAR08/Event/74841, , (2008).
  • Cornelius Toole, Andrei Hutanu, "Network Flow Based Resource Brokering and Optimization Techniques for Distributed Data Streaming Over Optical Network.", in Proceedings of Mardigras Conference 2008., , (2008).
  • Christian D. Ott, Erik Schnetter, Gabrielle Allen, Edward Seidel, Jian Tao, Burkhard Zink, "A case study for petascale applications in astrophysics: Simulating Gamma-Ray Bursts.", In Proceedings of the 15th ACM Mardi Gras conference: From lightweight mash-ups to lambda grids: Understanding the spectrum of distributed computing requirements, applications, tools, infrastructures, interoperability, and the incremental adoption of key capabilities, number 18 in ACM International Conference Proceeding Series, Baton Rouge, Louisiana, 2008. ACM. (doi:10.1145/1341811.1341831)a, , (2008).
  • Cheri A. McFerrin, H. Barry Dellinger, Randall W. Hall, "Ab Initio Study of the Formation and Degradation Reactions of Semiquinone and Phenoxyl Radical.", J. Molecular Structure: THEOCHEM, 848, 16-23 (2008).
  • CD Wick , LX Dang, "Molecular dynamics study of ion transfer and distribution at the interface of water and 1,2-dichloroethane.", J. Phys. Chem. C, 112, 647-649 (Cover article) (2008).
  • C.D. Wick, "NaCl dissociation dynamics at the air-water interface.", J. Phys. Chem. C, 113, 2497-2502 (2008).
  • C.D. Wick, S.S. Xantheas, "Computational investigation of interfacial and bulk chloride and iodide first solvation shell aqueous structure.", J. Phys. Chem. B, 113, 4141-4146 Cover article (2008).
  • C.D. Wick, L.X. Dang, "Recent advances in understanding the transfer of polarizable ions across aqueous interfaces.", Chem. Phys. Lett., 458, 1(Invited Review, Cover article) (2008).
  • Bin Chen, Ricky B. Nella, Samuel J. Keasler, "Fractal aggregates in protein crystal nucleation.", J. Phys. Chem. B, 112, 4725-4730 (2008).
  • Bin Chen, Hyunmi Kim, Samuel J. Keasler, Ricky B. Nella, "An aggregation-volume-bias Monte Carlo investigation on the condensation of a Lennard-Jones vapor and crystal nucleation in cluster systems: An in-depth evaluation of the classical nucleation theory.", J. Phys. Chem. B, 112, 4067-4078 (2008).
  • B. Zink, E. Schnetter, M. Tiglio, "Multipatch methods in general relativistic astrophysics: Hydrodynamical flows on fixed background.", Phys. Rev. D, 77(10), 103015 http://adsabs.harvard.edu/abs/2008PhRvD..77j3015Z (2008).
  • B. Li, L. Peng , B. Ramada, "Efficient MART-Aided Modeling for Microarchitecture Design Space Exploration and Performance Prediction.", in Proceeding of the 2008 ACM International Conference on Measurement and Modeling of Computer Systems (SIGMETRICS), Annapolis, MD, Jun. 2008, 439-440 (2008).
  • Andrei Hutanu, Jinghua Ge, Cornelius Toole, Ravi Paruchuri, Adam Yate, Gabrielle Allen, the LONI, Internet2 DCN and CESNET Team, "Distributed Visualization Using Optical Networks: Demonstration at Super computing 2008.", CCT TR Series, 2008, http://www.cct.lsu.edu/CCT-TR/CCT-TR-2008-10, , (2008).
  • Andrei Hutanu, Gabrielle Allen, "A case for application-level control of network resource.", in Proceedings of CESNET, , (2008).
  • Anderson M, Hirschmann E W, Lehner L, Liebling, S L, Motl P M, Neilsen D, Palenzuela C , Tohline J E, "Magnetized Neutron-Star Mergers and Gravitational-Wave Signal.", PhRvL, 100, 1101. (2008).
  • Anderson M, Hirschmann E W, Lehner L, Liebling S L, Motl P M, Neilsen D, Palenzuela C , Tohline J E, "Simulating binary neutron stars: Dynamics and gravitational wave.", PhRvD, 77, 4006A. (2008).
  • A.De, S. acharya, "Large Eddy Simulation of Turbulent Bunsen Flame with a Thickened-Flame Approach.", Proceedings of the 2008 Technical Meeting of the Central States Section of The Combustion Institute, April 20-22, 2008, Tuscaloosa, AL., , (2008).
  • A. De, S. Acharya, "Large Eddy Simulation of Premixed Comustion with a Thickened-Flame Approach.", ASME Turbo Expo 2008: Power for Land, Sea and Air, ASME Paper GT2008-51320. , (2008).
  • Tyagi M., Roy S., Acharya S., Hervey A.D., "Simulation of laminar and turbulent impeller stirred tanks using immersed boundary method and large eddy simulation technique in multi-block curvilinear geometrie.", Chem. Eng. Sci., 62(5), 1351-1363 (2007).
  • Tomas Dytrych, Kristina D. Sviratcheva, Chairul Bahri, Jerry P. Draayer , James P. Vary, "Evidence for Symplectic Symmetry in Ab Initio No-Core ShellModel Results for Light Nuclei.", Phys. Rev. Lett., 98, 162503 (2007).
  • Tomas Dytrych, Kristina D. Sviratcheva, Chairul Bahri, Jerry P. Draayer , James P. Vary, "Dominant role of symplectic symmetry in ab initio no-coreshell model results for light nuclei.", Phys. Rev. C, 76, 014315 (2007).
  • S. Ou, J. Ji, L. Liu, X. Peng, "Simulations of Disk-Planet Interaction: Baroclinic Generation of Vortensity and Nonaxisymmetric Rossby-Wave Instabilitie.", The Astrophysical Journal, 667, 1220 (2007).
  • Ricky B. Nella, J. Ilja Siepmann, Bin Chen, "Dumbbells and Onions in Ternary Nucleation.", Phys. Chem. Chem. Phys., 9, 2779-2781 (2007).
  • Randall W. Hall , Peter G. Wolyne, "Intermolecular forces and the glass transition.", J. Phys. Chem. B, 112, 301-312 (2007).
  • Ou S, Tohline J E , Motl P M, "Further Evidence for an Elliptical Instability in Rotating Fluid Bars and Ellipsoidal Star.", The Astrophysical Journal, 665, 1074 (2007).
  • Ott, C. D., Dimmelmeier, H., Marek, A., Janka, H.-T., Zink, B., Hawke, I., Schnetter, E., "Rotating collapse of stellar iron cores in general relativity.", Classical and Quantum Gravity, 24(12), S139-S154 (2007).
  • Ott, C. D., Dimmelmeier, H., Marek, A., Janka, H.-T., Hawke, I., Zink, B., Schnetter, E., "3D Collapse of Rotating Stellar Iron Cores in General Relativity Including Deleptonization and a Nuclear Equation of State.", Physical Review Letters, 98(26), 261101 (2007).
  • Oard S, Karki BB , Enright F, "Is there a difference in metal ion-based inhibition between members of thionin family: Molecular dynamics simulation study.", Biophysical Chemistry, 130, 65-75. (2007).
  • Motl P M, Frank J, Tohline J E , D'Souza M C R, "The Stability of Double White Dwarf Binaries Undergoing Direct-Impact Accretion.", The Astrophysical Journal, 670, 1314 (2007).
  • Michael Koppitz, Denis Pollney, Christian Reisswig, Luciano Rezzolla, Jonathan Thornburg, Peter Diener, Erik Schnetter, "Recoil velocities from equal-mass binary-black-hole merger.", Phys. Rev. Lett., 99, 041102 (doi:10.1103/PhysRevLett.99.041102) (2007).
  • M.T. Balhoff, K.E. Thompson, M.A. Hjortsø, "Coupling pore-scale networks to continuum-scale models of porous media.", Computers and Geosciences, 33, 393-410 (2007).
  • M. Chinchio, C. Czaplewski, A. Liwo , S. Odlziej , H. A. Scheraga , "Dynamic formation and breaking of disulfide bonds in molecular dynamics simulations with the UNRES force field..", J.Chem.Theor.Comput., 3, 1236-1248 (2007).
  • Lina Battestilli, Andrei Hutanu, Gigi Karmous-Edward, Daniel S. Katz, Jon MacLaren, Joe Mambretti, John H. Moore, Ed Seidel, Seung-Jong Park, Harry G. Perro, Kamaraju Syam Sundar, Savera Tanwir, Steven R. Thorpe, Yufeng Xin, "EnLIGHTened Computing: An Architecture for Co-allocating Network, Compute and other Grid Resources for High-End Application.", HONET 2007, http://www.enlightenedcomputing.org, , (2007).
  • Karki BB, Bhattarai D , Stixrude L, "First principles simulations of liquid silica: structural and dynamical behavior at high pressure.", Physical Review B, 76, 104205 (2007).
  • Karki BB , Khanduja G, "A computational study of ionic vacancies and diffusion in MgSiO3 perovskite and postperovskite phase.", Earth and Planetary Science Letters, 260, 201-211 (2007).
  • K.E. Thompson, "Computing particle surface areas and contact areas from three-dimensional tomography data of particulate material.", Particle & Particle Systems Characterization, 24(6), 440-452 (2007).
  • Jonathan Thornburg, Peter Diener, Denis Pollney, Luciano Rezzolla, Erik Schnetter, Edward Seidel, Ryoji Takahashi, "Are moving punctures equivalent to moving black holes?.", Class. Quantum Grav., 24, 3911–3918 (doi:10.1088/0264-9381/24/15/009) (2007).
  • Jha Khamra, Merzky Kaiser and Weidner, "Design and Implementation of Network Performance Aware Applications Using SAGA and Cactu.", IEEE Conference on e-Science 2007, Bangalore, ISBN 978-0-7695-3064-2, , 143-150 (2007).
  • Jha Kaiser Merzky and Weidern, "Application Level Interoperabiloity Using SAGA.", International Workshop on Interoperation and Interoperabiltiy in Grids, Held in conjunction with e-Science 2007, Bangalore (India) ISBN: 978-0-7695-3064-2, , 584-59 (2007).
  • Gennady Gutsev, Yuriy Shul'ga, Mogus Mochena, Elijah Johnson, "Oxidation of C60 Fullerite by Interstitial Oxygen.", J. of Physical Chemistry, jp-2007-10745f.R2 (accepted), (2007).
  • Frank Muldoon , Sumanta Acharya, "Computations of Pulsed Film-cooling.", ASME TURBO EXPO 2007, GT2007-28156., , (2007).
  • Frank Muldoon , Sumanta Acharya, "A Modification of the Artificial Compressibility Algorithm with ImprovedConvergence Characteristic.", International Journal for Numerical Methods in Fluids, 55(4), 307-345 (2007).
  • Frank Muldoon , Sumanta Acharya, "A Divergence-Free Interpolation Scheme for the Immersed Boundary Method.", International Journal for NumericalMethods in Fluids, 55(4), 307-345 (2007).
  • Esma Yildirim, Haluk Topcuoglu , Tevfik Kosar, "A Memetic Algorithm for Reliability-based Dynamic Scheduling in Heterogeneous Computing Environment.", In Proceedings of 19th IASTED International Conference on Parallel and Distributed Computing and Systems (PDCS 2007), Cambridge, MA, November 2007, , (2007).
  • Enrique Pazo, Ernst Nils Dorband, Alessandro Nagar, Carlos Palenzuela, Erik Schnetter, Manuel Tiglio, "How far away is far enough for extracting numerical waveforms, and how much do they depend on the extraction method?.", Class. Quantum Grav., 24, S341–S368 (doi:10.1088/0264-9381/24/12/S22), (2007).
  • EnLIGHTened: Steven R. Thorpe, Lina Battestilli, Gigi Karmous-Edward, Andrei Hutanu, Jon MacLaren, Joe Mambretti, John H. Moore, Kamaraju Syam Sundar, Yufeng Xin, G-lambda: Atsuko Takefusa, Michiaki Hayashi, Akira Hirano, Shuichi Okamoto, Tomohiro Kudoh, Takahiro Miyamoto, Yukio Tsukishima, Tomohiro Otani, Hidemoto Nakada, Hideaki Tanaka, Atsushi Taniguchi, Yasunori Sameshima, Masahiko Jinno, "G-lambda and EnLIGHTened: Wrapped In Middleware Co-allocating Compute and Network Resources Across Japan and the US.", in Proceedings of GridNets 2007, , (2007).
  • Dylan Stark, Gabrielle Allen, Tom Goodale, Thomas Radke, Erik Schnetter, "An extensible timing infrastructure for adaptive large-scale application.", In Roman Wyrzykowski, Jack Dongarra, Konrad Karczewski, and Jerzy Wasniewski, editors, Parallel Processing and Applied Mathematics (PPAM), 2007, Gdansk, Poland, Lecture Notes in Computer Science (LNCS) Springer, 4967, 1170-1179 (2007).
  • Dimmelmeier, H., Ott, C. D., Janka, H.-T., Marek, A., Müller, E., "Generic Gravitational-Wave Signals from the Collapse of Rotating Stellar Cores.", Physical Review Letters, 98(25), 251101 (2007).
  • Dessart, L., Burrows, A., Livne, E., Ott, C. D., "Magnetically Driven Explosions of Rapidly Rotating White Dwarfs Following Accretion-Induced Collapse.", The Astrophysical Journal, 669(1), 585-599 (2007).
  • David Brown, Olivier Sarbach, Erik Schnetter, Manuel Tiglio, Peter Diener, Ian Hawke, Denis Pollney, "Excision without excision.", Phys. Rev. D, 76, 081503(R)(doi:10.1103/PhysRevD.76.081503) (2007).
  • Christian D. Ott, Harald Dimmelmeier, Andreas Marek, Hans-Thomas Janka, Burkhard Zink, Ian Hawke, Erik Schnetter, "Rotating collapse of stellar iron cores in general relativity.", Class. Quantum Grav., 24, S139–S154 (doi:10.1088/0264-9381/24/12/S10) (2007).
  • C.S. Willson, N. Dill, S. Danchuk, W. Barlett, R. Waldron, "Physical and Numerical Modeling of River and Sediment Diversions.", Proceedings of the Sixth International Symposium on Coastal Engineering and Science of Coastal Sediment Processes, May 13-17, 2007, New Orleans, LA. Ed. N.C. Kraus and J.D. Rosati, 749-761 (2007).
  • Burrows, A., Livne, E., Dessart, L., Ott, C. D., Murphy, J., "Features of the Acoustic Mechanism of Core-Collapse Supernova Explosions.", The Astrophysical Journal, 655(1), 416-433 (2007).
  • Burrows, A., Dessart, L., Livne, E., Ott, C. D., Murphy, J., "Simulations of Magnetically Driven Supernova and Hypernova Explosions in the Context of Rapid Rotation.", The Astrophysical Journal, 664(1), 416-434 (2007).
  • Barry Dellinger, Slawomir Lomnicki, Lavrent Khachatryan, Zofia Masko, Randall W. Hall, JulienAdounkpe, Cheri McFerrin, Hieu Truong, "Formation and stabilization of persistent free rad-ical.", Proceedings of the Combustion Institute, 31, 521-528 (2007).
  • B. Abbott (Oklahoma U.), A. Baranovski, M. Diesburg, G. Garzoglio (Fermilab), T. Kurca (Lyon IPN) , P. Mhashilkar (Fermilab), "DZero data-intensive computing on the Open Science Grid.", FERMILAB-PUB-07-462-CD, Sep 2007. 8pp., Presented at International Conference on Computing in High Energy and Nuclear Physics (CHEP 07), Victoria, BC, Canada, 2-7 Sep 2007., , (2007).
  • Anthony A. Mrse, Robert Wu, Zhehong Gan, Frank R. Fronczek, Randall W. Hall, Larry S. Simeral, Leslie G. Butler, "Isobutylaluminoxane Hydride, A High Aluminum-Content Cluster: Struc-ture, 27 Al MAS NMR, and Comparison with EFG Tensors from ab initio Molecular Orbital Calculation.", J. Inorg. Chem., , 44-47 (2007).
  • Andrei Hutanu, "A data transfer benchmark.", in Proceedings of the 4th High-End Visualization Workshop International Workshop, , 86-95 (2007).
  • Andrei Hutanu, Miloˇs Liˇska, Petr Holub, Ravi Paruchuri, Daniel Eiland, Steven R. Thorpe, Yufeng Xin, "Uncompressed HD video for collaborative teaching - an experiment.", in Proceedings of CollaborateCom 2007., , (2007).
  • W. Zhang, K.E. Thompson, A.H. Reed, L. Beenken, "Relationship between packing structure and porosity in fixed beds of equilateral cylindrical particle.", Chem. Eng. Sci., 61, 8060-8074 (2006).
  • Samuel J. Keasler, Ricky B. Nella, Bin Chen, "Water mediated attraction between repulsive ions - A cluster-based simulation approach.", J. Chem. Phys., 125, 144520 (2006).
  • S. Oard , BB Karki, "Mechanism of beta-purothionin antimicrobial peptide inhibition by metal ions: Molecular dynamics simulation study.", Biophysical Chemistry, 121, 30-43 (2006).
  • Ricky B. Nella, Matthew E. McKenzie, Bin Chen, "Probing the nucleation mechanism for the binary n-nonane/1-alcohol series with atomistic simulation.", J. Phys. Chem. B, 110, 18619-18628 (2006).
  • Petr Holub, Ludˇek Matyska, Miloˇs Liˇska, Lukas Hejtmanek, Jiri Denemark, Tomas Rebok, Andrei Hutanu, Ravi Paruchuri, Jan Radil, Eva Hladka, "High-Definition Multimedia for Multiparty Low-Latency Interactive Communication.", Future Generation Computer Systems: The International Journal of Grid Computing: Theory, Methods and Applications, 22(8), 856–861 (2006).
  • Ott, Christian D., Burrows, Adam, Thompson, Todd A., Livne, Eli, Walder, Rolf, "The Spin Periods and Rotational Profiles of Neutron Stars at Birth.", The Astrophysical Journal Supplement Series, 164(1), 130-155 (2006).
  • Ott, Christian D., Burrows, Adam, Dessart, Luc, Livne, Eli, "A New Mechanism for Gravitational-Wave Emission in Core-Collapse Supernovae.", Physical Review Letters, 96(20), 201102 (2006).
  • Mehmet Balman, "Tetrahedral Mesh Refinement in Distributed Environment.", In Proceedings of IEEE International Conference on Parallel Processing Workshops (ICPP) (The 8th Workshop on High Performance Scientific and Engineering Computing (HPSEC-06)), 14-18 August 2006, Columbus, Ohio, USA. IEEE Computer Society 2006, , 497-504 ISBN 0-7695-2637-3 (2006).
  • Matthew E. McKenzie , Bin Chen, "Unravelling the peculiar nucleation mechanisms for non-ideal binary mixtures with atomistic simulation.", J. Phys. Chem. B, 110, 3511-3516 (2006).
  • M. Balhoff, K.E. Thompson, "A macroscopic model for shear-thinning flow in packed beds based on network modeling.", Chem. Eng. Sci., 61, 698-719 (2006).
  • Lacramioara Negureanu, Randall W. Hall, Leslie G. Butler, Larry S. Simeral, "MAO (methyalu-moxane) Polymerization Mechanism from Quantum Molecular Dynamics and Electronic StructureCalculation.", J. Amer. Chem. Soc., 128, 16816-16826 (2006).
  • L. Yan, K.E. Thompson, K.T. Valsaraj, "A numerical study of the coalescence of emulsion droplets in a constricted tube.", J. Colloid Interface Sci., 298, 832-844 (2006).
  • Karki BB, Bhattarai D , Stixrude L, "First principles calculations of the structural, dynamical and electronic properties of liquid MgO.", Physical Review B, 73, 174208 (2006).
  • K. E. Thompson, C. S. Willson, W. Zhang, "Quantitative computer reconstruction of particulate materials from microtomography image.", Powder Technology, 163, 169-182 (2006).
  • Frank Muldoon , Sumanta Acharya, "Analysis of k-e Budgets for Film Cooling Using Direct NumericalSimulation.", AIAA Journal, 2006, 44(12), 3010-3021 (2006).
  • Dimitris Nikitopoulo, Sumanta Acharya, Jeremiah Oertling , Frank Muldoon, "On Active Control of Film-Cooling Flow.", ASME TURBO EXPO 2006, GT2006-90051, 61-69 (2006).
  • BB Karki, Dipesh Bhattarai, Lars Stixrude, "A first-principles computational framework for liquid mineral system.", CMC: Computers, Materials and Continua, 3, 107-118. (2006).
  • BB Karki , G. Khanduja, "Vacancy defects in MgO at high pressure.", American Mineralogist, 91, 511-516 (2006).
  • BB Karki , G. Khanduja, "Computer simulation and visualization of vacancy defects in MgSiO3 perovskite.", Modeling and Simulation in Materials Science and Engineering, 14, 1041-1052 (2006).
  • Andrei Hutanu, Stephan Hirmer, Gabrielle Allen, Andre Merzky, "Analysis of Remote Execution Models for Grid Middleware.", in Proceedings of the 4th International Workshop on Middleware for Grid Computing (MGC 2006), , 62–67 (2006).
  • Andrei Hutanu, Gabrielle Allen, Stephen D. Beck, Petr Holub, Hartmut Kaiser, Archit Kulshrestha, Miloˇs Liˇska, Jon MacLaren, Ludˇek Matyska, Ravi Paruchuri, Steffen Prohaska, Ed Seidel, Brygg Ullmer, Shalini Venkataraman, "Distributed and collaborative visualization of large data sets using high-speed network.", Future Generation Computer Systems: The International Journal of Grid Computing: Theory, Methods and Applications, 22(8), 1004-1010 (2006).
  • Frank Muldoon , Sumanta Acharya, "Mass Conservation in the Immersed Boundary Method.", 2005 ASME Fluids Engineering Division Summer Meeting and Exhibition,, FEDSM2005-77301, 411-419 (2005).
  • Frank Muldoon , Sumanta Acharya, "Direct Numerical Simulation of a Film Cooling Jet.", ASME TURBO EXPO 2004, GT2004-53502, , 461-473 (2004).
  • J.C. Thrash, Ben Temperton, B.K. Swan, Z.C. Landry, T. Woyke, E.F. Long, et.al., "Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype", The ISME Journal, 1-12, doi:10.1038/ismej.2013.243 (2014).