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Versions and Availability


Module Names for comsol on smic
Machine Version Module Name
smic 5.3a comsol/5.3a

▶ Module FAQ?

The information here is applicable to LSU HPC and LONI systems.



A user may choose between using /bin/bash and /bin/tcsh. Details about each shell follows.


System resource file: /etc/profile

When one access the shell, the following user files are read in if they exist (in order):

  1. ~/.bash_profile (anything sent to STDOUT or STDERR will cause things like rsync to break)
  2. ~/.bashrc (interactive login only)
  3. ~/.profile

When a user logs out of an interactive session, the file ~/.bash_logout is executed if it exists.

The default value of the environmental variable, PATH, is set automatically using Modules. See below for more information.


The file ~/.cshrc is used to customize the user's environment if his login shell is /bin/tcsh.


Modules is a utility which helps users manage the complex business of setting up their shell environment in the face of potentially conflicting application versions and libraries.

Default Setup

When a user logs in, the system looks for a file named .modules in their home directory. This file contains module commands to set up the initial shell environment.

Viewing Available Modules

The command

$ module avail

displays a list of all the modules available. The list will look something like:

--- some stuff deleted ---

---------------- /usr/local/packages/Modules/modulefiles/admin -----------------
EasyBuild/1.11.1       GCC/4.9.0              INTEL-140-MPICH/3.1.1
EasyBuild/1.13.0       INTEL/14.0.2           INTEL-140-MVAPICH2/2.0
--- some stuff deleted ---

The module names take the form appname/version/compiler, providing the application name, the version, and information about how it was compiled (if needed).

Managing Modules

Besides avail, there are other basic module commands to use for manipulating the environment. These include:

add/load mod1 mod2 ... modn . . . Add modules
rm/unload mod1 mod2 ... modn  . . Remove modules
switch/swap mod . . . . . . . . . Switch or swap one module for another
display/show  . . . . . . . . . . List modules loaded in the environment
avail . . . . . . . . . . . . . . List available module names
whatis mod1 mod2 ... modn . . . . Describe listed modules

The -h option to module will list all available commands.

About the Software

COMSOL Multiphysics® is a general-purpose platform software for modeling engineering applications. You can use the core package on its own or expand its functionality with any combination of add-on modules for simulating designs and processes based on electromagnetics, structural mechanics, acoustics, fluid flow, heat transfer, and chemical engineering behavior.


Use the "comsol -help" command to print out the usage information:

[lyan1@mike5 ~]$ comsol -help
Usage: comsol [options] [target] [target arguments]

COMSOL commands:

   comsol                       Run COMSOL Multiphysics Desktop
   comsol batch                 Run a COMSOL job
   comsol compile               Compile a COMSOL Model java file
   comsol mphclient             Run COMSOL Multiphysics Desktop client
   comsol mphserver             Run COMSOL Multiphysics Server
   comsol mphserver matlab      Run MATLAB with COMSOL Multiphysics Server
   comsol hydra                 Run Hydra commands
   comsol mpd                   Run MPD commands

COMSOL options:


Example: run COMSOL with one single host

Run a COMSOL job from the command line:

comsol batch -inputfile blasius_boundary_layer.mph -outputfile blasius_solved.mph -batchlog blasius.log

Here is an sample PBS job script:


#PBS -A your_allocation_name
#PBS -l walltime=2:00:00
#PBS -l nodes=1:ppn=16
#PBS -q checkpt

comsol batch -inputfile blasius_boundary_layer.mph -outputfile blasius_solved.mph -batchlog blasius.log

Example: run COMSOL with multiple hosts

When running COMSOL with multiple hosts, the following flags need to be specified:

  • -nn <the number of nodes> | Total number of compute nodes
  • -nnhost <number of nodes per host> | Number of nodes per host
  • -np <number of cores per node> | Number of cores per node
  • -f </path/to/hostfile> | Path and file containing the list of hostnames

For instance, to run on 4 hosts (16 cores each) with 8 COMSOL nodes, you would need:

	-nn 8 -nnhost 2 -np 8 

In the above example, "-nn 8" means 8 COMSOL nodes. Since we have 4 hosts, the value for "-nnhost" is 8/4 = 2 (nodes per host). The value for "-np" can be obtained by dividing the number of cores each host by the value of "-nnhost": 16/2 = 8.

The hostfile can be created by running this command:

	uniq $PBS_NODEFILE > myhosts

Putting everything together in a PBS job script:

#PBS -A your_allocation_name
#PBS -l walltime=2:00:00
#PBS -l nodes=4:ppn=20
#PBS -q checkpt


uniq $PBS_NODEFILE > myhosts
comsol batch -nn 8 -nnhost 2 -np 8 -f myhosts -inputfile blasius_boundary_layer.mph -outputfile blasius_solved.mph -batchlog blasius.log

If COMSOL started successfully on multiple hosts, you should see something like this:



Last modified: September 10 2020 11:58:50.