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RUM - RNA-Seq Unified Mapper

RUM is an alignment, junction calling, and feature quantification pipeline specifically designed for Illumina RNA-Seq data. It can be used effectively for DNA sequencing (e.g. ChIP-Seq) and microarray probe mapping, and has a strand specific mode. RUM is highly configurable, however it does not require fussing over options -- the defaults generally give good results.


Users may direct questions to