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SAMtools

TAPIR (Tally Approximations of Phylogenetic Informativeness Rapidly) contains programs to estimate and plot phylogenetic informativeness for large datasets.

Citation Requested

When using tapir, please cite:

  • Faircloth BC, Chang J, Alfaro ME: tapir enables high throughput analysis of phylogenetic informativeness. https://github.com/faircloth-lab/tapir
  • Townsend JP: Profiling phylogenetic informativeness. Systematic Biol. 2007, 56:222-231.
  • Pond SLK, Frost SDW, Muse SV: HyPhy: hypothesis testing using phylogenies. Bioinformatics 2005, 21:676-679.

Resources

  • None

Users may direct questions to sys-help@loni.org.