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HPC Software

The information on this page may not reflect all software available on HPC systems. If you do not see an application that you wish to use, please visit this page for information on how to request it. Or if you have questions about software that is currently available, please contact the HPC Help Desk sys-help@loni.org.

Alphabetical List of Software


a5_pipeline
abyss
adios2
aflowpi
agalma
amber
amos
ansys
autodock
autodock-vina
autodock_vina
autogrid
bazel
bbcp
bdftopcf
beagle_lib
beast
beast2
bedtools
bioperl
blast
blast+
blast-legacy
blat
boost
bowtie
bowtie2
bwa
bzip2
caffe
canu
cap3
cd-hit
clhep
clonalframe
clonalorigin
cmake
cmg
comsol
cp2k
cuda
cufflinks
curl
ddt
dendropy
dftbplus
diffutils
dmtcp
easybuild
eigen
exabayes
expat
fasttree
fastx-toolkit
fastx_toolkit
fftw
font-util
fontconfig
fontsproto
freeglut
garli
gatk
gaussian
gaussview
gcc
geant4
git
gnuparallel
gnuplot
gperf
gromacs
gsl
hdf5
hisat2
hmmer
hpx
htslib
hwloc
hypre
idba
ima2p
imagemagick
impi
intel
java
jdk
jellyfish
kokkos
lammps
lapack
last
libbeagle
libcerf
libfontenc
libgd
libgtextutils
libidn2
libuuid
libxfont
libxpm
libzmq
lmdb
lucy
mafft
mathematica
matlab
mauve
mercurial
mesa
metis
mira
mkfontdir
mkfontscale
mothur
mpich
mpich2
mrbayes
mummer
mummer4
mumps
muscle
mvapich2
namd
nanopolish
netcdf
netcdf-c
netcdf-cxx
netcdf-fortran
netcdf_c++
netcdf_fortran
novoplasty
nwchem
oases
octave
openbabel
openfoam
openmpi
orca
orthofinder
parallel
parallel-netcdf
parallel_netcdf
paraview
parmetis
paup
pcre
pcre2
perl
petsc
pgi
phylobayesmpi
phylobayes_mpi
pigz
poretools
prottest
python
qiime
qiime2
quantum-espresso
quorum
r
racon
raxml
ray
remora
repeatmasker
repeatmodeler
repet
revbayes
rnnotator
root
ruby
rum
samtools
scalapack
scotch
siesta
sina
soapdenovo
soapdenovo-trans
soapdenovo2
soapdenovotrans
soapdenovo_trans
spades
sparsehash
sprng
sspace
stacks
stampy
star
stringtie
structure
subversion
suite-sparse
superlu-dist
swift
swig
szip
tau
tophat
totalview
transabyss
trinity
t_coffee
util-macros
valgrind
vcftools
velvet
visit
vmatch
vmd
vsearch
vtune
wannier90
wq
xproto
xtrans
xz
zlib

Software Listing by Cluster