HPC Software
The information on this page may not reflect all software available on HPC systems. If you do not see an application that you wish to use, please visit this page for information on how to request it. Or if you have questions about software that is currently available, please contact the HPC Help Desk sys-help@loni.org.
Alphabetical List of Software
adios2
amber
ansys
autodock-vina
bcl2fastq
bdftopcf
beast2
blast
boost
bowtie
bowtie2
bwa
c-blosc
cellranger
cmake
cmg
comsol
cp2k
cuda
cufflinks
ddt
eigen
exabayes
exonerate
fastqc
fastx-toolkit
fftw
font-util
fontconfig
fontsproto
gatk
gaussian
gaussview
gcc
git
gnuparallel
gnuplot
gperf
gromacs
gsl
hdf5
hisat2
hmmer
hwloc
hybpiper
hypre
intel
jdk
jellyfish
kokkos
lammps
libbeagle
libcerf
libfontenc
libgd
libgtextutils
libidn2
libuuid
libxfont
libxpm
libzmq
lz4
mathematica
matlab
mesa
metis
mkfontdir
mkfontscale
mothur
mpich
mrbayes
mumps
muscle
mvapich2
namd
netcdf-c
netcdf-cxx
netcdf-fortran
nwchem
octave
openbabel
openfoam
openmpi
orca
parallel
parallel-netcdf
paraview
parmetis
pcre2
perl
petsc
pgi
python
qiime2
quantum-espresso
r
raxml
revbayes
samtools
scotch
snappy
soapdenovo-trans
soapdenovo2
spaceranger
spades
star
stringtie
suite-sparse
superlu-dist
swig
tau
trinity
util-macros
valgrind
vmd
vsearch
xproto
xtrans
Software Listing by Cluster
Deepbayou
cmake
cuda
ddt
gcc
hwloc
intel
jdk
matlab
mpich
mvapich2
openmpi
parallel
paraview
perl
pgi
python
r
Qb2
adios2
amber
autodock-vina
bcl2fastq
bdftopcf
beast2
blast
boost
bowtie2
bwa
c-blosc
cellranger
cmake
cuda
cufflinks
ddt
exabayes
exonerate
fftw
font-util
fontconfig
fontsproto
gatk
gaussian
gcc
git
gnuparallel
gnuplot
gperf
gromacs
gsl
hdf5
hwloc
hybpiper
hypre
intel
jdk
lammps
libcerf
libfontenc
libgd
libidn2
libuuid
libxfont
libxpm
lz4
matlab
metis
mkfontdir
mkfontscale
mothur
mpich
mumps
muscle
mvapich2
namd
netcdf-c
netcdf-cxx
netcdf-fortran
nwchem
openfoam
openmpi
orca
parallel
parallel-netcdf
parmetis
pcre2
perl
petsc
pgi
python
quantum-espresso
r
raxml
revbayes
samtools
scotch
snappy
soapdenovo-trans
soapdenovo2
spaceranger
spades
star
suite-sparse
superlu-dist
tau
trinity
util-macros
valgrind
vmd
vsearch
xproto
xtrans
Qb3
adios2
amber
autodock-vina
bcl2fastq
bdftopcf
beast2
blast
boost
bowtie
bowtie2
bwa
cellranger
cmake
cp2k
cuda
cufflinks
ddt
eigen
fastx-toolkit
fftw
font-util
fontconfig
fontsproto
gatk
gaussian
gcc
git
gnuplot
gperf
gromacs
gsl
hdf5
hmmer
hwloc
hypre
intel
jdk
kokkos
lammps
libbeagle
libcerf
libfontenc
libgd
libgtextutils
libidn2
libuuid
libxfont
libxpm
libzmq
matlab
mesa
metis
mkfontdir
mkfontscale
mothur
mpich
mrbayes
mumps
muscle
mvapich2
namd
netcdf-c
netcdf-cxx
netcdf-fortran
nwchem
octave
openbabel
openfoam
openmpi
parallel
parallel-netcdf
paraview
parmetis
pcre2
perl
petsc
pgi
python
quantum-espresso
r
raxml
revbayes
samtools
scotch
soapdenovo-trans
soapdenovo2
spaceranger
spades
suite-sparse
superlu-dist
swig
tau
trinity
util-macros
valgrind
vmd
xproto
xtrans
Smic
adios2
amber
ansys
autodock-vina
bcl2fastq
bdftopcf
beast2
blast
boost
bowtie2
bwa
cellranger
cmake
cmg
comsol
cuda
cufflinks
ddt
eigen
exabayes
fastqc
fftw
font-util
fontconfig
fontsproto
gatk
gaussian
gaussview
gcc
git
gnuparallel
gnuplot
gperf
gromacs
gsl
hdf5
hisat2
hmmer
hwloc
hypre
intel
jdk
lammps
libcerf
libfontenc
libgd
libidn2
libuuid
libxfont
libxpm
mathematica
matlab
metis
mkfontdir
mkfontscale
mothur
mpich
mumps
muscle
mvapich2
namd
netcdf-c
netcdf-cxx
netcdf-fortran
nwchem
openbabel
openfoam
openmpi
parallel
parallel-netcdf
paraview
parmetis
pcre2
perl
petsc
pgi
python
qiime2
quantum-espresso
r
raxml
revbayes
samtools
scotch
snappy
soapdenovo-trans
soapdenovo2
spades
star
stringtie
suite-sparse
superlu-dist
swig
tau
trinity
util-macros
valgrind
vsearch
xproto
xtrans
Supermike3
amber
autodock-vina
blast
boost
bowtie2
cmg
cuda
fftw
gatk
gaussian
gcc
gromacs
gsl
hdf5
hypre
intel
jellyfish
lammps
matlab
metis
mpich
mvapich2
namd
netcdf-c
netcdf-cxx
netcdf-fortran
openfoam
openmpi
parallel
parallel-netcdf
paraview
parmetis
python
quantum-espresso
r
raxml
revbayes
samtools
spades
star
suite-sparse
valgrind